TkA01G485170 | RubberDandelionOmics

Gene overview

TkA01G485170

Reference: TK1151 Chr: Chr01 Coordinates: 121444877-121446382 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1030 bp · TkA01G485170|TK1151|cDNA

GAAACTTTTTCCAACGATCTAACCTCACCTAACGAATGTCGTCGGAGACGTCCAAAGTCACGTCGGAGTTAACTACCGCCGCCGATTACGGCCTTAATCATAATGAAACAGAGCTCACTTTAGGTTTACCAGGGGAATCACGAGGTAAAAAGTTGGGAGCGAAACGACGGTTCTCGGAAACGATTGAATTGAAATTAAGCAGCAATGAAGATTCGGATGCTAATCAGTCGGATACCGAATGCTCAGATGCTACAAAACCT...

CDS

Download CDS FASTA

636 bp · TkA01G485170|TK1151|CDS

ATGTCGTCGGAGACGTCCAAAGTCACGTCGGAGTTAACTACCGCCGCCGATTACGGCCTTAATCATAATGAAACAGAGCTCACTTTAGGTTTACCAGGGGAATCACGAGGTAAAAAGTTGGGAGCGAAACGACGGTTCTCGGAAACGATTGAATTGAAATTAAGCAGCAATGAAGATTCGGATGCTAATCAGTCGGATACCGAATGCTCAGATGCTACAAAACCTCTTTCAGAAAAGGAACAAGTGGTCGGATGGCCGCC...

Protein

Download Protein FASTA

211 aa · TkA01G485170|TK1151|PROTEIN

MSSETSKVTSELTTAADYGLNHNETELTLGLPGESRGKKLGAKRRFSETIELKLSSNEDSDANQSDTECSDATKPLSEKEQVVGWPPVNFYRKNAVSSNFKFVKVAVDGAPYMRKVDLGSYAGYQQLLCALEDIFSCFTDSGLNENKLMDPLNQMEYVTTYVDKDGDWMLVGDVPWTMFFDSCKRIRLMRSSEAINGLAPRTPLKCSVSSC

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G485170`
TK1151 ID	TkA01G485170
OH-1004 ID	LXL04_002065
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA01G485170

Location Chr01:121444877-121446382 (+)

Description Similar to IAA17: Auxin-responsive protein IAA17

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g04250`	Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.	No verified direct reference in this release
`At4g14550`	Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os01g0178500`	Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.	No verified direct reference in this release
`Os05g0178600`	Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.	No verified direct reference in this release
`Os06g0597000`	Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_002065 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0009733 response to auxin Biological Process

GO:0009734 auxin-activated signaling pathway Biological Process

GO:0010102 lateral root morphogenesis Biological Process

GO:0045892 negative regulation of DNA-templated transcription Biological Process

GO:1900057 positive regulation of leaf senescence Biological Process

GO:0005634 nucleus Cellular Component

GO:0000976 transcription cis-regulatory region binding Molecular Function

GO:0003700 DNA-binding transcription factor activity Molecular Function

GO:0042802 identical protein binding Molecular Function

KEGG gene cross-reference

ath:AT1G04250

ath:AT3G04730

ath:AT4G14550

dosa:Os01g0178500

dosa:Os05g0178600

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.878

Rank 1 · TkA01G485170 · TK1151

Cytoplasm0.183

Rank 2 · TkA01G485170 · TK1151

Cell membrane0.057

Rank 3 · TkA01G485170 · TK1151

Endoplasmic reticulum0.029

Rank 4 · TkA01G485170 · TK1151

Plastid0.016

Rank 5 · TkA01G485170 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02309AUX_IAA24-201 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G485170	`PF02309`	AUX_IAA	24	201	1e-56	192.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`P93830`	Arabidopsis thaliana	sp\|P93830\|IAA17_ARATH Auxin-responsive protein IAA17	48.400%	Swiss-Prot	Medium
`Q38832`	Arabidopsis thaliana	sp\|Q38832\|IAA14_ARATH Auxin-responsive protein IAA14	48.900%	Swiss-Prot	Medium
`Q5VRD1`	Oryza sativa subsp. japonica	sp\|Q5VRD1\|IAA1_ORYSJ Auxin-responsive protein IAA1	51.900%	Swiss-Prot	High
`Q6AT10`	Oryza sativa subsp. japonica	sp\|Q6AT10\|IAA15_ORYSJ Auxin-responsive protein IAA15	48.600%	Swiss-Prot	Medium
`Q69VE0`	Oryza sativa subsp. japonica	sp\|Q69VE0\|IAA23_ORYSJ Auxin-responsive protein IAA23	51.000%	Swiss-Prot	High

JBrowse

View in Genome Browser

Gene Card