TkA01G345340 | RubberDandelionOmics

Gene overview

TkA01G345340

Reference: TK1151 Chr: Chr01 Coordinates: 85792058-85796301 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2778 bp · TkA01G345340|TK1151|cDNA

ATGGGGGGTAAAGTCGACACTTCTATCAACAAAGACAATGCTCCATATGTATACAAGCTTAGTGGTCAAAATTATCATTCTTTGGGAAGTCTGCTACCTCCAGATGAATCCACACCAAAATTCTCTCAACTTACATATATGATACCGAGAACGAATAAAGGATCGGAAGCATCAAGTTCAACTTCCAAGTCACTCGATGTTGAAATCATAAATTTTTTGAAGGTTATGTTTGATTCGACAAATGAGTTGGTGAAAATTTA...

CDS

Download CDS FASTA

2778 bp · TkA01G345340|TK1151|CDS

ATGGGGGGTAAAGTCGACACTTCTATCAACAAAGACAATGCTCCATATGTATACAAGCTTAGTGGTCAAAATTATCATTCTTTGGGAAGTCTGCTACCTCCAGATGAATCCACACCAAAATTCTCTCAACTTACATATATGATACCGAGAACGAATAAAGGATCGGAAGCATCAAGTTCAACTTCCAAGTCACTCGATGTTGAAATCATAAATTTTTTGAAGGTTATGTTTGATTCGACAAATGAGTTGGTGAAAATTTA...

Protein

Download Protein FASTA

925 aa · TkA01G345340|TK1151|PROTEIN

MGGKVDTSINKDNAPYVYKLSGQNYHSLGSLLPPDESTPKFSQLTYMIPRTNKGSEASSSTSKSLDVEIINFLKVMFDSTNELVKIYRIARDCFDENPEINLKIRLIGRRQQDGRTFNLPTASEVAALIVGDINKDIENRDILITTKSGSLQRISELHPSYLSLQYPVLFPYGEDGYRVDIPIPRASFQDRNKGYSLILNARRLYQQLLVDSYTMIESERLFYVRREQTVLRCESFETLNNIRKSGNNNVSNVGQRVILP...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G345340`
TK1151 ID	TkA01G345340
OH-1004 ID	LXL04_033271
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	52.200
Protein coverage (%)	TK1151 100.000 / OH-1004 58.892 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID	`TkA01G345340`
Location	Chr01:85792058-85796301 (-)
Description	Similar to Pif1: ATP-dependent DNA helicase PIF1
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_033271` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0000722 telomere maintenance via recombination Biological Process GO:0000723 telomere maintenance Biological Process GO:0000724 double-strand break repair via homologous recombination Biological Process GO:0000727 double-strand break repair via break-induced replication Biological Process GO:0001117 protein-DNA-RNA complex disassembly Biological Process GO:0006260 DNA replication Biological Process GO:0006281 DNA repair Biological Process GO:0006289 nucleotide-excision repair Biological Process GO:0006310 DNA recombination Biological Process GO:0007004 telomere maintenance via telomerase Biological Process GO:0007140 male meiotic nuclear division Biological Process GO:0009555 pollen development Biological Process
KEGG gene cross-reference	cal:CAALFM_CR07360WA dosa:Os02g0776800 hsa:80119 mmu:208084 rno:367645 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.882

Rank 1 · TkA01G345340 · TK1151

Cytoplasm0.157

Rank 2 · TkA01G345340 · TK1151

Mitochondrion0.039

Rank 3 · TkA01G345340 · TK1151

Cell membrane0.014

Rank 4 · TkA01G345340 · TK1151

Extracellular0.014

Rank 5 · TkA01G345340 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF30188PF3D7_1446700_N61-112 aa

PF14214Helitron_like_N191-363 aa

PF30188PF3D7_1446700_N236-261 aa

PF23343REP_ORF2-G2P320-377 aa

PF20199RepSA348-364 aa

PF05970PIF1644-688 aa

PF13191AAA_16654-691 aa

PF13401AAA_22663-710 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G345340	`PF30188`	PF3D7_1446700_N	61	112	0.091	13.4
TkA01G345340	`PF14214`	Helitron_like_N	191	363	1.3e-53	182.8
TkA01G345340	`PF30188`	PF3D7_1446700_N	236	261	0.091	13.4
TkA01G345340	`PF23343`	REP_ORF2-G2P	320	377	0.00059	20.8
TkA01G345340	`PF20199`	RepSA	348	364	0.16	11.8
TkA01G345340	`PF05970`	PIF1	644	688	1.1e-27	97.9
TkA01G345340	`PF13191`	AAA_16	654	691	0.0017	19.6
TkA01G345340	`PF13401`	AAA_22	663	710	0.0093	17.0
TkA01G345340	`PF09848`	SLFN-g3_helicase	666	695	0.26	11.2
TkA01G345340	`PF05970`	PIF1	687	747	1.1e-27	97.9
TkA01G345340	`PF21530`	Pif1_2B_dom	791	835	3.1e-17	62.7
TkA01G345340	`PF02689`	Herpes_Helicase	883	921	0.0014	17.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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