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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G177290
Reference: TK1151 Chr: Chr01 Coordinates: 45426378-45428126 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1749 bp · TkA01G177290|TK1151|cDNA

ATGTGGGAAAGCAACATCACTTATTGGAATACCCATTTGACCGCCCCCTCTGCAACAATCAAAGAAGTTCGATTCGATTCAGATGGTGTTTTAGGTCTGTACGATGATAGCAATAAAGTTATTTGGTCCATATCAAGTACCGATTCCGGTGACACTTCTGTCAGTTTAAGGCATCTTAGAATCGATCAAGATGGTAACTTGAGAATCTATTCATGGAATAACGCTCTTCGTTCGTGGAAAGTCGGATGGCAAGCCGTAGA...

CDS

Download CDS FASTA

1749 bp · TkA01G177290|TK1151|CDS

ATGTGGGAAAGCAACATCACTTATTGGAATACCCATTTGACCGCCCCCTCTGCAACAATCAAAGAAGTTCGATTCGATTCAGATGGTGTTTTAGGTCTGTACGATGATAGCAATAAAGTTATTTGGTCCATATCAAGTACCGATTCCGGTGACACTTCTGTCAGTTTAAGGCATCTTAGAATCGATCAAGATGGTAACTTGAGAATCTATTCATGGAATAACGCTCTTCGTTCGTGGAAAGTCGGATGGCAAGCCGTAGA...

Protein

Download Protein FASTA

582 aa · TkA01G177290|TK1151|PROTEIN

MWESNITYWNTHLTAPSATIKEVRFDSDGVLGLYDDSNKVIWSISSTDSGDTSVSLRHLRIDQDGNLRIYSWNNALRSWKVGWQAVEDQCNVFGSCGLYSVCGYNSTGPICGCLYSDSLESGNGIPSSDSNSGCKKMGDLGNCKSHTSMLVMKQTVLYGLYPPHDIDMMLSEESCKEYCANDTSCLALTSKNDGSGLCTVKRTAFISGSTGPSIPSTSFLKVCLIPQAVAAKGANPNSTPTPKSISFPFPGDFRKLISAV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA01G177290
TK1151 IDTkA01G177290
OH-1004 IDLXL04_004257
Relationship / confidenceRbh Sequence Supported / Probable
Protein identity (%)99.500
Protein coverage (%)TK1151 100.000 / OH-1004 71.675
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G177290
LocationChr01:45426378-45428126 (+)
DescriptionSimilar to SD31: G-type lectin S-receptor-like serine/threonine-protein kinase SD3-1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g41890 G-type lectin S-receptor-like serine/threonine-protein kinase SD3-1. No verified direct reference in this release
At1g34300 G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300. No verified direct reference in this release
At5g24080 G-type lectin S-receptor-like serine/threonine-protein kinase At5g24080. No verified direct reference in this release
At2g19130 G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
UniProt: A2XQD3 Involved in resistance against the herbivorous insect brown planthopper (N.lugens, BPH). No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_004257 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0046777 protein autophosphorylation Biological Process
GO:0048544 recognition of pollen Biological Process
GO:0005576 extracellular region Cellular Component
GO:0005634 nucleus Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0004672 protein kinase activity Molecular Function
GO:0004674 protein serine/threonine kinase activity Molecular Function
GO:0005516 calmodulin binding Molecular Function
GO:0005524 ATP binding Molecular Function
GO:0030246 carbohydrate binding Molecular Function
GO:0031625 ubiquitin protein ligase binding Molecular Function
GO:0106310 protein serine kinase activity Molecular Function
KEGG gene cross-reference
ath:AT1G34300
ath:AT2G19130
ath:AT2G41890
ath:AT4G32300
ath:AT5G24080
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.866
Rank 1 · TkA01G177290 · TK1151
Endoplasmic reticulum0.086
Rank 2 · TkA01G177290 · TK1151
Cytoplasm0.069
Rank 3 · TkA01G177290 · TK1151
Nucleus0.046
Rank 4 · TkA01G177290 · TK1151
Lysosome / Vacuole0.026
Rank 5 · TkA01G177290 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00954S_locus_glycop2-18 aa
PF01453B_lectin21-92 aa
PF00954S_locus_glycop52-114 aa
PF08276PAN_284-111 aa
PF10215Ost490-96 aa
PF00024PAN_1154-207 aa
PF08276PAN_2162-206 aa
PF08277PAN_3170-203 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G177290PF00954S_locus_glycop2183.5e-1144.3
TkA01G177290PF01453B_lectin21920.0117.0
TkA01G177290PF00954S_locus_glycop521143.5e-1144.3
TkA01G177290PF08276PAN_2841110.004917.7
TkA01G177290PF10215Ost490963.18.5
TkA01G177290PF00024PAN_11542070.03414.7
TkA01G177290PF08276PAN_21622060.004917.7
TkA01G177290PF08277PAN_31702030.09713.2
TkA01G177290PF00954S_locus_glycop1721863.5e-1144.3
TkA01G177290PF10215Ost42702843.18.5
TkA01G177290PF07714PK_Tyr_Ser-Thr3274681.8e-2177.3
TkA01G177290PF00069Pkinase3274681.1e-1765.1
TkA01G177290PF00024PAN_14594720.03414.7
TkA01G177290PF07714PK_Tyr_Ser-Thr4765521.8e-2177.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
P93756Arabidopsis thalianasp|P93756|SD31_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase SD3-136.900%Swiss-ProtMedium
Q9XID3Arabidopsis thalianasp|Q9XID3|Y1343_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase At1g3430030.900%Swiss-ProtMedium
Q9FLV4Arabidopsis thalianasp|Q9FLV4|Y5248_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase At5g2408029.200%Swiss-ProtLow
O64477Arabidopsis thalianasp|O64477|Y2913_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase At2g1913026.500%Swiss-ProtLow
A2XQD3Oryza sativa subsp. indicasp|A2XQD3|LERK2_ORYSI G-type lectin S-receptor-like serine/threonine-protein kinase LECRK227.500%Swiss-ProtLow

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