LXL04_004257 | RubberDandelionOmics

Gene overview

LXL04_004257

Reference: OH-1004 Chr: Chr01 Coordinates: 131187984-131190422 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2439 bp · LXL04_004257|LXL04_004257|OH1004|cDNA

ATGTTGGAATCTTTGCTTATTCTCATGGTGTTTCAGGTACCAATTAAGAATATCAAAGGTAAGAGCTTCTGTTTCAACACCTTTTCCTGTTCGTGCTCTGCTTTAGCTCTTGTAGTGTTCTTGGGATTCGCTAATTGCGTATTATGCAATAAACATCCCATGGATTCAGCTCCTTTAGGTTTTGAAATAACAGGGTTTGGATATGATTCTGATAGAAATGTCGATAGTCATCGTAAAGCTAACAATTTGGTGTCTGAAAA...

CDS

Download CDS FASTA

2439 bp · LXL04_004257|LXL04_004257|OH1004|CDS

ATGTTGGAATCTTTGCTTATTCTCATGGTGTTTCAGGTACCAATTAAGAATATCAAAGGTAAGAGCTTCTGTTTCAACACCTTTTCCTGTTCGTGCTCTGCTTTAGCTCTTGTAGTGTTCTTGGGATTCGCTAATTGCGTATTATGCAATAAACATCCCATGGATTCAGCTCCTTTAGGTTTTGAAATAACAGGGTTTGGATATGATTCTGATAGAAATGTCGATAGTCATCGTAAAGCTAACAATTTGGTGTCTGAAAA...

Protein

Download Protein FASTA

812 aa · LXL04_004257|LXL04_004257|OH1004|PROTEIN

MLESLLILMVFQVPIKNIKGKSFCFNTFSCSCSALALVVFLGFANCVLCNKHPMDSAPLGFEITGFGYDSDRNVDSHRKANNLVSENGIFEFGFFERDGGEFVVGIRYNLSPKSSNLPVWTVGGGVRVPINSTLKFSMDGRLILMENPSNSIVWSSNTSNSGVETVTLMNNGNLVLCNSQNIVIWESFQRPTNTLLPGQFLRYPQNLRAPSTKSITSYYTFVIHPEGLALMWESNITYWNTHLTAPSATIKEVRFDSDGV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_004257`
TK1151 ID	TkA01G177290
OH-1004 ID	LXL04_004257
Relationship / confidence	Rbh Sequence Supported / Probable
Protein identity (%)	99.500
Protein coverage (%)	TK1151 100.000 / OH-1004 71.675 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_004257

Location Chr01:131187984-131190422 (-)

Description Similar to SD31: G-type lectin S-receptor-like serine/threonine-protein kinase SD3-1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g41890`	G-type lectin S-receptor-like serine/threonine-protein kinase SD3-1.	No verified direct reference in this release
`At1g34300`	G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300.	No verified direct reference in this release
`At5g24080`	G-type lectin S-receptor-like serine/threonine-protein kinase At5g24080.	No verified direct reference in this release
`At2g19130`	G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130.	No verified direct reference in this release
`At4g32300`	G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_004257 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0046777 protein autophosphorylation Biological Process

GO:0048544 recognition of pollen Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0004672 protein kinase activity Molecular Function

GO:0004674 protein serine/threonine kinase activity Molecular Function

GO:0005516 calmodulin binding Molecular Function

GO:0005524 ATP binding Molecular Function

GO:0030246 carbohydrate binding Molecular Function

GO:0031625 ubiquitin protein ligase binding Molecular Function

GO:0106310 protein serine kinase activity Molecular Function

KEGG gene cross-reference

ath:AT1G34300

ath:AT2G19130

ath:AT2G41890

ath:AT4G32300

ath:AT5G24080

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.838

Rank 1 · LXL04_004257 · OH-1004

Endoplasmic reticulum0.089

Rank 2 · LXL04_004257 · OH-1004

Cytoplasm0.069

Rank 3 · LXL04_004257 · OH-1004

Nucleus0.044

Rank 4 · LXL04_004257 · OH-1004

Extracellular0.035

Rank 5 · LXL04_004257 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01453.31B_lectin131-204 aa

PF00954.26S_locus_glycop282-344 aa

PF07714.24PK_Tyr_Ser-Thr557-781 aa

PF00069.32Pkinase557-698 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_004257	`PF01453.31`	B_lectin	131	204	2.3e-19	70.5
LXL04_004257	`PF00954.26`	S_locus_glycop	282	344	9.9e-12	46.1
LXL04_004257	`PF07714.24`	PK_Tyr_Ser-Thr	557	781	4.7e-21	76.0
LXL04_004257	`PF00069.32`	Pkinase	557	698	2.1e-17	64.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`P93756`	Arabidopsis thaliana	G-type lectin S-receptor-like serine/threonine-protein kinase SD3-1	37.012%	Swiss-Prot	moderate database homology
`Q9XID3`	Arabidopsis thaliana	G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300	29.635%	Swiss-Prot	weak database homology
`Q9FLV4`	Arabidopsis thaliana	G-type lectin S-receptor-like serine/threonine-protein kinase At5g24080	27.000%	Swiss-Prot	weak database homology
`O64477`	Arabidopsis thaliana	G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130	26.709%	Swiss-Prot	weak database homology
`Q8RWZ5`	Arabidopsis thaliana	G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5	26.481%	Swiss-Prot	weak database homology

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