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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G028340
Reference: TK1151 Chr: Chr01 Coordinates: 7261683-7268725 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1243 bp · TkA01G028340|TK1151|cDNA

GGTATTCTCCTGAAGAGGGCGACGCAAAAATGGAGGAAGAGGAACAACATTTTGGATCAAAAGAGAAAGGATCGATACAAAGTGCATCTAGTGCCTCAGCTGAAGATCATGGAAGGAAGAAAGGAACCGGGCACTCTTTGCAACTACAAACCAAAATTCAGCTATATCTTCTCTGATATGGACGGTACACTTCTGAATAGCAAAAGTCTAGTTTCTGCTACAAATGCAGAAGCTATAAAAGAGGCTTCATCAAATGGTGT...

CDS

Download CDS FASTA

978 bp · TkA01G028340|TK1151|CDS

GGTATTCTCCTGAAGAGGGCGACGCAAAAATGGAGGAAGAGGAACAACATTTTGGATCAAAAGAGAAAGGATCGATACAAAGTGCATCTAGTGCCTCAGCTGAAGATCATGGAAGGAAGAAAGGAACCGGGCACTCTTTGCAACTACAAACCAAAATTCAGCTATATCTTCTCTGATATGGACGGTACACTTCTGAATAGCAAAAGTCTAGTTTCTGCTACAAATGCAGAAGCTATAAAAGAGGCTTCATCAAATGGTGT...

Protein

Download Protein FASTA

325 aa · TkA01G028340|TK1151|PROTEIN

GILLKRATQKWRKRNNILDQKRKDRYKVHLVPQLKIMEGRKEPGTLCNYKPKFSYIFSDMDGTLLNSKSLVSATNAEAIKEASSNGVKVVLATGKTRPAAITLLNMVDLSGKDGIVSENSPGVFIQGLLVYGKDGKEIHRTNLDPNVCKEAFQYSIEHNIPLVAFSENRLLTLFSHPLVDSLHTTYHEPKAEIMPSVEDLLGSGDVQKVLFLDTAEGVAGTLRPYWSEATKGRACVVQAQADILEIVPPGTSKGNGVRML...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA01G028340
TK1151 IDTkA01G028340
OH-1004 IDLXL04_005610
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)100.000
Protein coverage (%)TK1151 88.308 / OH-1004 85.928
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G028340
LocationChr01:7261683-7268725 (+)
DescriptionSimilar to YBEY: Endoribonuclease YBEY, chloroplastic
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g25870 Endoribonuclease required for chloroplast ribosomal RNA (rRNA) processing and essential for normal growth and development.
The conserved endoribonuclease YbeY is required for chloroplast ribosomal RNA processing in Arabidopsis.2015 · DOI: 10.1104/pp.114.255000

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_005610 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009658 chloroplast organization Biological Process
GO:0016311 dephosphorylation Biological Process
GO:1901259 chloroplast rRNA processing Biological Process
GO:0005829 cytosol Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0009570 chloroplast stroma Cellular Component
GO:0000287 magnesium ion binding Molecular Function
GO:0004222 metalloendopeptidase activity Molecular Function
GO:0004521 RNA endonuclease activity Molecular Function
GO:0016791 phosphatase activity Molecular Function
GO:0046872 metal ion binding Molecular Function
GO:0050308 sugar-phosphatase activity Molecular Function
KEGG gene cross-reference
ath:AT2G25870
bsu:BSU39550
ecc:c4619
ecj:JW3674
eco:b3697
ecoc:C3026_20040
sfl:SF3767
sfx:S4004
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.357
Rank 1 · TkA01G028340 · TK1151
Mitochondrion0.197
Rank 2 · TkA01G028340 · TK1151
Plastid0.178
Rank 3 · TkA01G028340 · TK1151
Nucleus0.152
Rank 4 · TkA01G028340 · TK1151
Peroxisome0.111
Rank 5 · TkA01G028340 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF08282Hydrolase_356-320 aa
PF00702Hydrolase56-78 aa
PF05116S6PP56-110 aa
PF12710HAD56-70 aa
PF13344Hydrolase_656-99 aa
PF11019DUF260858-73 aa
PF13419HAD_259-82 aa
PF00702Hydrolase76-109 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G028340PF08282Hydrolase_3563206.9e-54184.0
TkA01G028340PF00702Hydrolase56782.3e-1248.4
TkA01G028340PF05116S6PP561102.9e-1247.5
TkA01G028340PF12710HAD56700.0001323.1
TkA01G028340PF13344Hydrolase_656990.00717.1
TkA01G028340PF11019DUF260858730.1212.5
TkA01G028340PF13419HAD_259820.000123.1
TkA01G028340PF00702Hydrolase761092.3e-1248.4
TkA01G028340PF13419HAD_2771090.000123.1
TkA01G028340PF12710HAD771080.0001323.1
TkA01G028340PF13242Hydrolase_like821010.1612.7
TkA01G028340PF13419HAD_21501900.000123.1
TkA01G028340PF02358Trehalose_PPase2312830.003817.1
TkA01G028340PF05116S6PP2342992.9e-1247.5
TkA01G028340PF00702Hydrolase2362872.3e-1248.4
TkA01G028340PF11019DUF26082502850.1212.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q8L5Z4Arabidopsis thalianasp|Q8L5Z4|YBEY_ARATH Endoribonuclease YBEY, chloroplastic70.500%Swiss-ProtHigh

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