TkA01G017110 | RubberDandelionOmics

Gene overview

TkA01G017110

Reference: TK1151 Chr: Chr01 Coordinates: 4363926-4364231 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

306 bp · TkA01G017110|TK1151|cDNA

ATGTTCAAAACATTCAAGAAAAAGGGTTGCAAGATTTATCCTTTAATGGGAGTTGTATTTAGTGGTTCTACAGCATCTGGTGCCTTTCATAATGCTTCAACTTGTGCTCCACAGACATCAGAAGAAGAGCGTAGAATTGAGGATGAGTATCTAGATGTTAGTAGTTTTAATAGTGTTGGCGAGAGTGGTGAGAGTGGTCAGAAGGGAAAGCGTAAGGCTGAAGGGGACCTAGAGGGTATCATACCTGATACTAGGAGAGA...

CDS

Download CDS FASTA

306 bp · TkA01G017110|TK1151|CDS

ATGTTCAAAACATTCAAGAAAAAGGGTTGCAAGATTTATCCTTTAATGGGAGTTGTATTTAGTGGTTCTACAGCATCTGGTGCCTTTCATAATGCTTCAACTTGTGCTCCACAGACATCAGAAGAAGAGCGTAGAATTGAGGATGAGTATCTAGATGTTAGTAGTTTTAATAGTGTTGGCGAGAGTGGTGAGAGTGGTCAGAAGGGAAAGCGTAAGGCTGAAGGGGACCTAGAGGGTATCATACCTGATACTAGGAGAGA...

Protein

Download Protein FASTA

101 aa · TkA01G017110|TK1151|PROTEIN

MFKTFKKKGCKIYPLMGVVFSGSTASGAFHNASTCAPQTSEEERRIEDEYLDVSSFNSVGESGESGQKGKRKAEGDLEGIIPDTRREKKSVRSFKYDACEN

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G017110`
TK1151 ID	TkA01G017110
OH-1004 ID	LXL04_014265
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	95.900
Protein coverage (%)	TK1151 97.030 / OH-1004 10.515 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID	`TkA01G017110`
Location	Chr01:4363926-4364231 (-)
Description	Similar to ALP1: Protein ANTAGONIST OF LIKE HETEROCHROMATIN PROTEIN 1
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_014265` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0006351 DNA-templated transcription Biological Process GO:0040029 epigenetic regulation of gene expression Biological Process GO:0000118 histone deacetylase complex Cellular Component GO:0005634 nucleus Cellular Component GO:0035098 ESC/E(Z) complex Cellular Component GO:0035102 PRC1 complex Cellular Component GO:0003682 chromatin binding Molecular Function GO:0004518 nuclease activity Molecular Function GO:0016787 hydrolase activity Molecular Function GO:0046872 metal ion binding Molecular Function
KEGG gene cross-reference	ath:AT3G55350 ath:AT3G63270 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.961

Rank 1 · TkA01G017110 · TK1151

Cytoplasm0.130

Rank 2 · TkA01G017110 · TK1151

Mitochondrion0.015

Rank 3 · TkA01G017110 · TK1151

Cell membrane0.012

Rank 4 · TkA01G017110 · TK1151

Extracellular0.011

Rank 5 · TkA01G017110 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF15889DUF473815-41 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G017110	`PF15889`	DUF4738	15	41	0.2	12.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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No result was found for this query.

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