LXL04_037464 | RubberDandelionOmics

Gene overview

LXL04_037464

Reference: OH-1004 Chr: Chr09 Coordinates: 11465590-11466339 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

750 bp · LXL04_037464|LXL04_037464|OH1004|cDNA

ATGTTCTTGCTCCTTCCGTTCTCTGTCTCTCTGGCACCAGGGCGAGTGAAGTTGTATGGAAGCCAGTTTGCGAGGAAAGGAGATGAAGGTTTGATCTATTTTCAATTGGAGAAGAAGAGTGTTTTTAGTTGGATTAGAGGTGAAATTGGTTTGAGGATTTATTACTTTGATGATGTCGAAGTAGACGGCGATCAGGATACGAATAATGATAATGCTCAACAGCCACCGCCGTCTGAGAAGGAGGGGCCACCACAACCGCA...

CDS

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750 bp · LXL04_037464|LXL04_037464|OH1004|CDS

ATGTTCTTGCTCCTTCCGTTCTCTGTCTCTCTGGCACCAGGGCGAGTGAAGTTGTATGGAAGCCAGTTTGCGAGGAAAGGAGATGAAGGTTTGATCTATTTTCAATTGGAGAAGAAGAGTGTTTTTAGTTGGATTAGAGGTGAAATTGGTTTGAGGATTTATTACTTTGATGATGTCGAAGTAGACGGCGATCAGGATACGAATAATGATAATGCTCAACAGCCACCGCCGTCTGAGAAGGAGGGGCCACCACAACCGCA...

Protein

Download Protein FASTA

249 aa · LXL04_037464|LXL04_037464|OH1004|PROTEIN

MFLLLPFSVSLAPGRVKLYGSQFARKGDEGLIYFQLEKKSVFSWIRGEIGLRIYYFDDVEVDGDQDTNNDNAQQPPPSEKEGPPQPQQEGRKLEDVRMEAPAPTEVVTENLHQPPMVTVEEAPPAVTVQMENHHNQQHHGIHPPPFHPEYPPEIRRMQTGRVGVGIGGGDRVRVLKRPDNGDYSLRVIPRRSTNGEPERIPAYDLVEPMQYLFVRIVKARGLSQHESPYVRIGSSVRSKPGIPRPGEER

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_037464`
TK1151 ID	TkA04G309920
OH-1004 ID	LXL04_037464
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	87.100
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_037464

Location Chr09:11465590-11466339 (-)

Description Similar to QKY: Protein QUIRKY

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g74720`	May be involved in Ca 2(+)-dependent signaling and membrane trafficking.	No verified direct reference in this release
`At3g03680`	May function as a signaling molecule by regulating the trafficking of other regulators.	No verified direct reference in this release
`At5g17980`	May function as a signaling molecule by regulating the trafficking of other regulators.	No verified direct reference in this release
`At4g11610`	May function as a signaling molecule by regulating the trafficking of other regulators.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_037464 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009911 positive regulation of flower development Biological Process

GO:0010497 plasmodesmata-mediated intercellular transport Biological Process

GO:0048467 gynoecium development Biological Process

GO:0048729 tissue morphogenesis Biological Process

GO:0051211 anisotropic cell growth Biological Process

GO:0099402 plant organ development Biological Process

GO:0000139 Golgi membrane Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

GO:0005789 endoplasmic reticulum membrane Cellular Component

GO:0005829 cytosol Cellular Component

KEGG gene cross-reference

ath:AT1G74720

ath:AT3G03680

ath:AT4G11610

ath:AT5G17980

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.399

Rank 1 · LXL04_037464 · OH-1004

Nucleus0.393

Rank 2 · LXL04_037464 · OH-1004

Cell membrane0.288

Rank 3 · LXL04_037464 · OH-1004

Endoplasmic reticulum0.110

Rank 4 · LXL04_037464 · OH-1004

Golgi apparatus0.057

Rank 5 · LXL04_037464 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`B8XCH5`	Arabidopsis thaliana	Protein QUIRKY	44.086%	Swiss-Prot	moderate database homology
`Q9SS68`	Arabidopsis thaliana	Multiple C2 domain and transmembrane region protein 14	60.000%	Swiss-Prot	weak database homology
`Q9FJG3`	Arabidopsis thaliana	Multiple C2 domain and transmembrane region protein 16	55.556%	Swiss-Prot	weak database homology
`Q84TJ7`	Arabidopsis thaliana	Multiple C2 domain and transmembrane region protein 7	23.506%	Swiss-Prot	weak database homology

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