TkA04G309920 | RubberDandelionOmics

Gene overview

TkA04G309920

Reference: TK1151 Chr: Chr04 Coordinates: 78174369-78175118 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

654 bp · TkA04G309920|TK1151|cDNA

ATGTTCTTGCTCCTTCCGTTCTCTGTCTCTCTGGCACCAGGGCGAGTGAAGTTGTATGGAAGCCAGTTTGCGAGGAAAGGAGATGAAGACGGCGATCAGGATACGAATAATGATAATGCTCAACAGCCACCGCCGTCTGAGAAGGAGGGGCCACCACAACCGCAGCAAGAAGGGCGGAAATTGGAGGATGTAAGAATGGAAGCTCCGGCTCCAACAGAGGTTGTCACAGAGAATTTACATCAACCGCCAATGGTTACAGT...

CDS

Download CDS FASTA

654 bp · TkA04G309920|TK1151|CDS

ATGTTCTTGCTCCTTCCGTTCTCTGTCTCTCTGGCACCAGGGCGAGTGAAGTTGTATGGAAGCCAGTTTGCGAGGAAAGGAGATGAAGACGGCGATCAGGATACGAATAATGATAATGCTCAACAGCCACCGCCGTCTGAGAAGGAGGGGCCACCACAACCGCAGCAAGAAGGGCGGAAATTGGAGGATGTAAGAATGGAAGCTCCGGCTCCAACAGAGGTTGTCACAGAGAATTTACATCAACCGCCAATGGTTACAGT...

Protein

Download Protein FASTA

217 aa · TkA04G309920|TK1151|PROTEIN

MFLLLPFSVSLAPGRVKLYGSQFARKGDEDGDQDTNNDNAQQPPPSEKEGPPQPQQEGRKLEDVRMEAPAPTEVVTENLHQPPMVTVEEAPPAVTVQMENHHNQQHHGIHPPPFHPEYPPEIRRMQTGRVGVGIGGGDRVRVLKRPDNGDYSLRVIPRRSTNGEPERIPAYDLVEPMQYLFVRIVKARGLSQHESPYVRIGSSVRSKPGIPRPGEER

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G309920`
TK1151 ID	TkA04G309920
OH-1004 ID	LXL04_037464
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	87.100
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA04G309920

Location Chr04:78174369-78175118 (-)

Description Similar to QKY: Protein QUIRKY

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g74720`	May be involved in Ca 2(+)-dependent signaling and membrane trafficking.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_037464 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009911 positive regulation of flower development Biological Process

GO:0010497 plasmodesmata-mediated intercellular transport Biological Process

GO:0048467 gynoecium development Biological Process

GO:0048729 tissue morphogenesis Biological Process

GO:0051211 anisotropic cell growth Biological Process

GO:0099402 plant organ development Biological Process

GO:0000139 Golgi membrane Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

GO:0005789 endoplasmic reticulum membrane Cellular Component

GO:0005829 cytosol Cellular Component

KEGG gene cross-reference

ath:AT1G74720

ath:AT3G03680

ath:AT4G11610

ath:AT5G17980

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.394

Rank 1 · TkA04G309920 · TK1151

Cytoplasm0.392

Rank 2 · TkA04G309920 · TK1151

Cell membrane0.258

Rank 3 · TkA04G309920 · TK1151

Endoplasmic reticulum0.126

Rank 4 · TkA04G309920 · TK1151

Mitochondrion0.073

Rank 5 · TkA04G309920 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`B8XCH5`	Arabidopsis thaliana	sp\|B8XCH5\|QKY_ARATH Protein QUIRKY	58.100%	Swiss-Prot	Low

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