LXL04_035483 | RubberDandelionOmics

Gene overview

LXL04_035483

Reference: OH-1004 Chr: Chr08 Coordinates: 23420195-23422309 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

906 bp · LXL04_035483|LXL04_035483|OH1004|cDNA

ATGAATCGCCGTGCAAATTATGGTTTTGTCATTCTATTCCTCTTCGTTTTCCTCGTTGCTTCTCGCGTTTCTGCGCAGGATGTTGCCGGTGATAATGATAAGGAAGACTCAACCGGATCCATTATAGATCTAGGTCGGCGTGGCAAAGTTGTTGTGGAAACAATAAAAAAGAATGTCATAGGTGACAAGATTGATCCAAAAGCCATAATGAATTTGGATTCTGGCCTTGGTGTTCTCGATGCATTCTTTGCCAGTTTTTC...

CDS

Download CDS FASTA

906 bp · LXL04_035483|LXL04_035483|OH1004|CDS

ATGAATCGCCGTGCAAATTATGGTTTTGTCATTCTATTCCTCTTCGTTTTCCTCGTTGCTTCTCGCGTTTCTGCGCAGGATGTTGCCGGTGATAATGATAAGGAAGACTCAACCGGATCCATTATAGATCTAGGTCGGCGTGGCAAAGTTGTTGTGGAAACAATAAAAAAGAATGTCATAGGTGACAAGATTGATCCAAAAGCCATAATGAATTTGGATTCTGGCCTTGGTGTTCTCGATGCATTCTTTGCCAGTTTTTC...

Protein

Download Protein FASTA

301 aa · LXL04_035483|LXL04_035483|OH1004|PROTEIN

MNRRANYGFVILFLFVFLVASRVSAQDVAGDNDKEDSTGSIIDLGRRGKVVVETIKKNVIGDKIDPKAIMNLDSGLGVLDAFFASFSMILVSEIGDETFIIAALMAMRHPKSIVLSGALSALFVMTILSTGLGRIVPNLISRKHTNSAATGIYLNCFSVMQFFIFFLGCDCSILLGDQIQKHLKKRRWRKYVEEKLESGQGKTAARRFLSRFCTPIFLESFILTFLAEWGDRSQIATIALATHKNAIGVALGATIGHTIC...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_035483`
TK1151 ID	TkA04G127600
OH-1004 ID	LXL04_035483
Relationship / confidence	Multi Candidate From Tk1151 / Complex relationship
Protein identity (%)	88.400
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_035483

Location Chr08:23420195-23422309 (-)

Description Similar to At5g36290: GDT1-like protein 3

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g36290`	GDT1-like protein 3.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os11g0472500`	GDT1-like protein 3.	No verified direct reference in this release
`UniProt: A2ZE50`	GDT1-like protein 3.	No verified direct reference in this release
`UniProt: A2YXC7`	GDT1-like protein 4.	No verified direct reference in this release
`Os08g0528500`	GDT1-like protein 4.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_035483 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006816 calcium ion transport Biological Process

GO:0006828 manganese ion transport Biological Process

GO:0032468 Golgi calcium ion homeostasis Biological Process

GO:0032472 Golgi calcium ion transport Biological Process

GO:0070588 calcium ion transmembrane transport Biological Process

GO:0071421 manganese ion transmembrane transport Biological Process

GO:0005794 Golgi apparatus Cellular Component

GO:0016020 membrane Cellular Component

GO:1990676 Golgi trans cisterna membrane Cellular Component

GO:0005384 manganese ion transmembrane transporter activity Molecular Function

GO:0005388 P-type calcium transporter activity Molecular Function

GO:0015085 calcium ion transmembrane transporter activity Molecular Function

KEGG gene cross-reference

ath:AT5G36290

dosa:Os08g0528500

dosa:Os11g0472500

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.388

Rank 1 · LXL04_035483 · OH-1004

Golgi apparatus0.251

Rank 2 · LXL04_035483 · OH-1004

Lysosome / Vacuole0.177

Rank 3 · LXL04_035483 · OH-1004

Cytoplasm0.100

Rank 4 · LXL04_035483 · OH-1004

Cell membrane0.076

Rank 5 · LXL04_035483 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01169.26GDT181-154 aa

PF01169.26GDT1217-294 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_035483	`PF01169.26`	GDT1	81	154	5.7e-42	142.6
LXL04_035483	`PF01169.26`	GDT1	217	294	5.7e-42	142.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q93Y38`	Arabidopsis thaliana	GDT1-like protein 3	64.452%	Swiss-Prot	strong database homology
`Q2R4J1`	Oryza sativa subsp. japonica	GDT1-like protein 3	66.182%	Swiss-Prot	strong database homology
`A2ZE50`	Oryza sativa subsp. indica	GDT1-like protein 3	66.182%	Swiss-Prot	strong database homology
`A2YXC7`	Oryza sativa subsp. indica	GDT1-like protein 4	66.423%	Swiss-Prot	strong database homology
`Q6ZIB9`	Oryza sativa subsp. japonica	GDT1-like protein 4	66.423%	Swiss-Prot	strong database homology

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