LXL04_033490 | RubberDandelionOmics

Gene overview

LXL04_033490

Reference: OH-1004 Chr: Chr07 Coordinates: 45635001-45637118 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1492 bp · LXL04_033490|LXL04_033490|OH1004|cDNA

ATGTACCACCCGATGTCTGCCCCTCCGCAATCGAGACCAGGTGGTTCCTTCTCGATCTCCATAAATCAATGCTTCTCCTTCTTTGCCACGAACCCCACCGACGAATCAGAATATCGAATCAGTCGACGCCAAAAACCCCACCAACGTAGTTATGTCAGAGATAATCAACCTTGAAGAGAATGAGCCAATTGACCTTGAAAGCAACAAGAATGGACCCGGTAAATACAAAGAAAGAGCCTGGGAATACAAAAGGATGGCTG...

CDS

Download CDS FASTA

1410 bp · LXL04_033490|LXL04_033490|OH1004|CDS

TTGCCACGAACCCCACCGACGAATCAGAATATCGAATCAGTCGACGCCAAAAACCCCACCAACGTAGTTATGTCAGAGATAATCAACCTTGAAGAGAATGAGCCAATTGACCTTGAAAGCAACAAGAATGGACCCGGTAAATACAAAGAAAGAGCCTGGGAATACAAAAGGATGGCTGTGGAAGATAGAATACGCAACTTACCAGGGCACTTGACAGACTCAATCTTAGAGCGGCTTCCGATTAAAGAGGCTGTAAGAAC...

Protein

Download Protein FASTA

469 aa · LXL04_033490|LXL04_033490|OH1004|PROTEIN

MPRTPPTNQNIESVDAKNPTNVVMSEIINLEENEPIDLESNKNGPGKYKERAWEYKRMAVEDRIRNLPGHLTDSILERLPIKEAVRTSILSRKWRYRWTTMRELVFDEQFSKKFAKTGAFGHNGFIRIINQAMFLHEGPLLKFHLHIPHISLDSFQEVDQWMLFLSRNGVTELILTNSIHRYQFPFHVFSCLELRKLELTNCLFKPPLEFKGFPNLEDLELTNINFGDNLCGCQISLPQLKTLSLYMCINVCKFSIKATN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_033490`
TK1151 ID	TkA08G268700
OH-1004 ID	LXL04_033490
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	99.000
Protein coverage (%)	TK1151 89.936 / OH-1004 89.552 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_033490

Location Chr07:45635001-45637118 (+)

Description Similar to At1g13570: F-box/FBD/LRR-repeat protein At1g13570

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g13570`	F-box/FBD/LRR-repeat protein At1g13570.	No verified direct reference in this release
`At1g32375`	Probable FBD-associated F-box protein At1g32375.	No verified direct reference in this release
`At5g50270`	Putative FBD-associated F-box protein At5g50270.	No verified direct reference in this release
`At5g56420`	F-box/FBD/LRR-repeat protein At5g56420.	No verified direct reference in this release
`At3g59200`	F-box/LRR-repeat protein At3g59200.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_033490 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0005634 nucleus Cellular Component

GO:0009507 chloroplast Cellular Component

KEGG gene cross-reference

ath:AT1G13570

ath:AT1G32375

ath:AT3G59200

ath:AT5G50270

ath:AT5G56420

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.850

Rank 1 · LXL04_033490 · OH-1004

Cytoplasm0.206

Rank 2 · LXL04_033490 · OH-1004

Cell membrane0.032

Rank 3 · LXL04_033490 · OH-1004

Endoplasmic reticulum0.031

Rank 4 · LXL04_033490 · OH-1004

Plastid0.020

Rank 5 · LXL04_033490 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00646.39F-box65-102 aa

PF23622.2LRR_At1g61320_AtMIF1143-267 aa

PF24758.2LRR_At5g56370158-372 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_033490	`PF00646.39`	F-box	65	102	9.6e-06	26.0
LXL04_033490	`PF23622.2`	LRR_At1g61320_AtMIF1	143	267	4.5e-09	36.9
LXL04_033490	`PF24758.2`	LRR_At5g56370	158	372	9.6e-11	42.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FZ70`	Arabidopsis thaliana	F-box/FBD/LRR-repeat protein At1g13570	33.729%	Swiss-Prot	moderate database homology
`Q9LQM1`	Arabidopsis thaliana	Probable FBD-associated F-box protein At1g32375	23.198%	Swiss-Prot	weak database homology
`Q9FGR8`	Arabidopsis thaliana	Putative FBD-associated F-box protein At5g50270	25.420%	Swiss-Prot	weak database homology
`Q9FM89`	Arabidopsis thaliana	F-box/FBD/LRR-repeat protein At5g56420	23.198%	Swiss-Prot	weak database homology
`Q9LX51`	Arabidopsis thaliana	F-box/LRR-repeat protein At3g59200	27.838%	Swiss-Prot	weak database homology

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