LXL04_029218 | RubberDandelionOmics

Gene overview

LXL04_029218

Reference: OH-1004 Chr: Chr06 Coordinates: 83953172-83957290 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2478 bp · LXL04_029218|LXL04_029218|OH1004|cDNA

ATGGCAAGTCTTGAGGATATTGGGGTTTCTGCACTCATAAACATTATCGGCGCTTTCGCATTTCTGTTAGCTTTTGCTTTTCTCAGACTTCAACCCGTTAATGACAGAGTTTACTTCCCCAAATGGTACATTAATGGAGCTCGGAGTAGTCCGAGACACCGTGGGAACTTTGTCGGCAAATTTGTCAATCTCAATTTCGCTACTTACCTTACTTTCCTCAATTGGATGCCTCAAGCTATGCGGATGAAAGAGTCTGAGAT...

CDS

Download CDS FASTA

2478 bp · LXL04_029218|LXL04_029218|OH1004|CDS

ATGGCAAGTCTTGAGGATATTGGGGTTTCTGCACTCATAAACATTATCGGCGCTTTCGCATTTCTGTTAGCTTTTGCTTTTCTCAGACTTCAACCCGTTAATGACAGAGTTTACTTCCCCAAATGGTACATTAATGGAGCTCGGAGTAGTCCGAGACACCGTGGGAACTTTGTCGGCAAATTTGTCAATCTCAATTTCGCTACTTACCTTACTTTCCTCAATTGGATGCCTCAAGCTATGCGGATGAAAGAGTCTGAGAT...

Protein

Download Protein FASTA

825 aa · LXL04_029218|LXL04_029218|OH1004|PROTEIN

MASLEDIGVSALINIIGAFAFLLAFAFLRLQPVNDRVYFPKWYINGARSSPRHRGNFVGKFVNLNFATYLTFLNWMPQAMRMKESEIIEHAGLDSAVFLRIYILGLKIFGPITIVALLFLVPVNVSGGTLFFLSKELVVSDIDKLSISNIQPKSLKFFAHISMMYAFTFWICYMLYKEYDMVASMRLKFLASKHRRAEQFTVLARNVPHVSGRAVSDSVDSFFKKNHPDHYLSHQVVYNANKFGRFVRRRHRLQNWLDYN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_029218`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_029218

Location Chr06:83953172-83957290 (+)

Description Similar to At1g32090: CSC1-like protein At1g32090

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g32090`	Acts as an osmosensitive calcium-permeable cation channel.	No verified direct reference in this release
`At3g21620`	Acts as an osmosensitive calcium-permeable cation channel.	No verified direct reference in this release
`At4g22120`	Acts as an osmosensitive calcium-permeable cation channel.	OSCA/TMEM63 are an Evolutionarily Conserved Family of Mechanically Activated Ion Channels.2018 · DOI: 10.7554/elife.41844 Structure-guided mutagenesis of OSCAs reveals differential activation to mechanical stimuli.2024 · DOI: 10.7554/elife.93147
`At4g02900`	Calcium-permeable channel involved in plant stomatal immunity.	No verified direct reference in this release
`At1g11960`	Calcium-permeable channel that plays a key role in plant stomatal immunity.	The calcium-permeable channel OSCA1.3 regulates plant stomatal immunity.2020 · DOI: 10.1038/s41586-020-2702-1

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_029218 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006812 monoatomic cation transport Biological Process

GO:0010118 stomatal movement Biological Process

GO:0045087 innate immune response Biological Process

GO:0140426 pathogen-associated molecular pattern receptor signaling pathway Biological Process

GO:0000139 Golgi membrane Cellular Component

GO:0005576 extracellular region Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0005227 calcium-activated cation channel activity Molecular Function

GO:0005262 calcium channel activity Molecular Function

KEGG gene cross-reference

ath:AT1G11960

ath:AT1G32090

ath:AT3G21620

ath:AT4G02900

ath:AT4G22120

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.720

Rank 1 · LXL04_029218 · OH-1004

Cytoplasm0.159

Rank 2 · LXL04_029218 · OH-1004

Lysosome / Vacuole0.088

Rank 3 · LXL04_029218 · OH-1004

Endoplasmic reticulum0.088

Rank 4 · LXL04_029218 · OH-1004

Golgi apparatus0.060

Rank 5 · LXL04_029218 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13967.12RSN1_TM7-178 aa

PF14703.13PHM7_cyt199-361 aa

PF02714.21RSN1_7TM372-644 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_029218	`PF13967.12`	RSN1_TM	7	178	6.7e-39	133.8
LXL04_029218	`PF14703.13`	PHM7_cyt	199	361	3.3e-47	161.6
LXL04_029218	`PF02714.21`	RSN1_7TM	372	644	2.7e-84	283.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9FVQ5`	Arabidopsis thaliana	Hyperosmolality-gated Ca2+ permeable channel 1.8	70.516%	Swiss-Prot	strong database homology
`Q9LVE4`	Arabidopsis thaliana	Hyperosmolality-gated Ca2+ permeable channel 1.5	62.415%	Swiss-Prot	strong database homology
`Q5XEZ5`	Arabidopsis thaliana	Hyperosmolality-gated Ca2+ permeable channel 1.2	60.209%	Swiss-Prot	strong database homology
`Q9SY14`	Arabidopsis thaliana	Hyperosmolality-gated Ca2+ permeable channel 1.7	59.399%	Swiss-Prot	strong database homology
`B5TYT3`	Arabidopsis thaliana	Hyperosmolality-gated Ca2+ permeable channel 1.3	60.158%	Swiss-Prot	strong database homology

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