Gene Card
Gene overview
cDNA / CDS / Protein Sequences
570 bp · LXL04_028256|LXL04_028256|OH1004|cDNA
ATGGTGGTGGCTTCTGGTAACTCCTTCGCCAAGGAGATGACCATTAGAAAACGTATCGGCAACATATTCAATAAAAGGGTGGAAGATTTTCCATCATTAAGAGAGTATAACGACTACTTAGAGGAAGTTGAGGACATGATTGTAAACTTGGTTGAAGGAATAGACGTTCCCGCCATTGAAGCAAAGATCGCATACTACCAAAAAGAAAACGCAGAACAAATAATGAATGCTCAAGCCCGTAAAGCTGAAGAATATGCAGC...
570 bp · LXL04_028256|LXL04_028256|OH1004|CDS
ATGGTGGTGGCTTCTGGTAACTCCTTCGCCAAGGAGATGACCATTAGAAAACGTATCGGCAACATATTCAATAAAAGGGTGGAAGATTTTCCATCATTAAGAGAGTATAACGACTACTTAGAGGAAGTTGAGGACATGATTGTAAACTTGGTTGAAGGAATAGACGTTCCCGCCATTGAAGCAAAGATCGCATACTACCAAAAAGAAAACGCAGAACAAATAATGAATGCTCAAGCCCGTAAAGCTGAAGAATATGCAGC...
Protein
Download Protein FASTA189 aa · LXL04_028256|LXL04_028256|OH1004|PROTEIN
MVVASGNSFAKEMTIRKRIGNIFNKRVEDFPSLREYNDYLEEVEDMIVNLVEGIDVPAIEAKIAYYQKENAEQIMNAQARKAEEYAAALAASKGQPPQTDVDMTSGTGSQFGVSTTDGHYVPAVAGGTIPQPRPTQPLPVGSADDMHAYHMDDEEMMRLKAERGGKAGGWSLELSRKRALEEAFGSIWI
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_028256 |
|---|---|
| TK1151 ID | TkA07G134340 |
| OH-1004 ID | LXL04_028256 |
| Relationship / confidence | Rbh High Identity Coverage Synteny / Strict |
| Protein identity (%) | 100.000 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_028256 |
|---|---|
| Location | Chr06:35982776-35983612 (-) |
| Description | Similar to mnat1: CDK-activating kinase assembly factor MAT1 |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0000082 G1/S transition of mitotic cell cycle Biological Process GO:0001174 transcriptional start site selection at RNA polymerase II promoter Biological Process GO:0006281 DNA repair Biological Process GO:0006289 nucleotide-excision repair Biological Process GO:0006355 regulation of DNA-templated transcription Biological Process GO:0006357 regulation of transcription by RNA polymerase II Biological Process GO:0006366 transcription by RNA polymerase II Biological Process GO:0006367 transcription initiation at RNA polymerase II promoter Biological Process GO:0048661 positive regulation of smooth muscle cell proliferation Biological Process GO:0051301 cell division Biological Process GO:0051592 response to calcium ion Biological Process GO:2000045 regulation of G1/S transition of mitotic cell cycle Biological Process |
| KEGG gene cross-reference | hsa:4331 mmu:17420 sce:YDR460W xla:380053 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF06391.19MAT111-88 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_028256 | PF06391.19 | MAT1 | 11 | 88 | 5.8e-29 | 102.1 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.