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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

LXL04_022162
Reference: OH-1004 Chr: Chr04 Coordinates: 145541425-145543317 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1893 bp · LXL04_022162|LXL04_022162|OH1004|cDNA

ATGAAAGCTGTTAGGAGACTCCATAAACTCTTTCAAACCTTGGAAACAAATAGAAGGAACTTCTCATCCATAGCCAGAGCCATAATACCCATACCCGTGGACGCACATGGCCCCATCTGGACACCCCAGGAAACCCCTTCATACATGCCGACATACCCTATTCGTCTACCCGCTCTACACCAAATTCTGCAAAAATGCGCGAGAGAACGTTTACCCATGGAAGGAATGACTTGTCATGGATGTCTAATCCAGTATGGATT...

CDS

Download CDS FASTA

1893 bp · LXL04_022162|LXL04_022162|OH1004|CDS

ATGAAAGCTGTTAGGAGACTCCATAAACTCTTTCAAACCTTGGAAACAAATAGAAGGAACTTCTCATCCATAGCCAGAGCCATAATACCCATACCCGTGGACGCACATGGCCCCATCTGGACACCCCAGGAAACCCCTTCATACATGCCGACATACCCTATTCGTCTACCCGCTCTACACCAAATTCTGCAAAAATGCGCGAGAGAACGTTTACCCATGGAAGGAATGACTTGTCATGGATGTCTAATCCAGTATGGATT...

Protein

Download Protein FASTA

630 aa · LXL04_022162|LXL04_022162|OH1004|PROTEIN

MKAVRRLHKLFQTLETNRRNFSSIARAIIPIPVDAHGPIWTPQETPSYMPTYPIRLPALHQILQKCARERLPMEGMTCHGCLIQYGLQANTLTSNMLINTYSKCGFLEYARKVFDEMPERTLVSWNTMIGSYTQNGNEKEALNLFLQMQREGTQCSEFTLSGVLCACAAEFAVLECKQLHAFVLKSSMLSNTFVSTALLDVYAKCNQIKDAISVFEYMPEKSPVTWSSMVAGYLKNELYEEALSMFKKVQITGVEFNQFL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDLXL04_022162
TK1151 IDTkA05G448580
OH-1004 IDLXL04_022162
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)80.900
Protein coverage (%)TK1151 91.383 / OH-1004 78.889
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionOH-1004 / GCA_047496595.1_OSU_TarKok_2.0
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDLXL04_022162
LocationChr04:145541425-145543317 (+)
DescriptionSimilar to PCMP-H16: Pentatricopeptide repeat-containing protein At5g04780, mitochondrial
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g04780 Pentatricopeptide repeat-containing protein At5g04780, mitochondrial. No verified direct reference in this release
At3g24000 Pentatricopeptide repeat-containing protein At3g24000, mitochondrial. No verified direct reference in this release
At2g03880 Pentatricopeptide repeat-containing protein At2g03880, mitochondrial. No verified direct reference in this release
At2g27610 Pentatricopeptide repeat-containing protein At2g27610. No verified direct reference in this release
At4g02750 Pentatricopeptide repeat-containing protein At4g02750. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_022162 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)
GO:0009451 RNA modification Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0003723 RNA binding Molecular Function
GO:0008270 zinc ion binding Molecular Function
KEGG gene cross-reference
ath:AT3G24000
ath:AT5G04780
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.669
Rank 1 · LXL04_022162 · OH-1004
Plastid0.189
Rank 2 · LXL04_022162 · OH-1004
Nucleus0.052
Rank 3 · LXL04_022162 · OH-1004
Cytoplasm0.039
Rank 4 · LXL04_022162 · OH-1004
Cell membrane0.007
Rank 5 · LXL04_022162 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01535.27PPR93-120 aa
PF13041.13PPR_2122-168 aa
PF01535.27PPR123-152 aa
PF01535.27PPR224-249 aa
PF13041.13PPR_2322-370 aa
PF13812.13PPR_3323-371 aa
PF01535.27PPR327-355 aa
PF12854.14PPR_1390-421 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
LXL04_022162PF01535.27PPR931201.1e-49164.0
LXL04_022162PF13041.13PPR_21221684.1e-46155.6
LXL04_022162PF01535.27PPR1231521.1e-49164.0
LXL04_022162PF01535.27PPR2242491.1e-49164.0
LXL04_022162PF13041.13PPR_23223704.1e-46155.6
LXL04_022162PF13812.13PPR_33233712e-1454.1
LXL04_022162PF01535.27PPR3273551.1e-49164.0
LXL04_022162PF12854.14PPR_13904211.4e-33115.0
LXL04_022162PF13041.13PPR_23934224.1e-46155.6
LXL04_022162PF01535.27PPR3964211.1e-49164.0
LXL04_022162PF20431.5E_motif4405021.9e-1970.4
LXL04_022162PF14432.13DYW_deaminase5386306.4e-39132.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9LZ19Arabidopsis thalianaPentatricopeptide repeat-containing protein At5g04780, mitochondrial59.091%Swiss-Protstrong database homology
Q9LIQ7Arabidopsis thalianaPentatricopeptide repeat-containing protein At3g24000, mitochondrial39.016%Swiss-Protmoderate database homology
Q9SI53Arabidopsis thalianaPentatricopeptide repeat-containing protein At2g03880, mitochondrial37.442%Swiss-Protmoderate database homology
Q9ZUW3Arabidopsis thalianaPentatricopeptide repeat-containing protein At2g2761040.000%Swiss-Protmoderate database homology
Q9SY02Arabidopsis thalianaPentatricopeptide repeat-containing protein At4g0275040.842%Swiss-Protmoderate database homology

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