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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA05G448580
Reference: TK1151 Chr: Chr05 Coordinates: 112122728-112124514 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1326 bp · TkA05G448580|TK1151|cDNA

ATGGCCCCATCTGGACACCCCAGGAAACCCCTTCATACATGCCGACATACCCTATTCGTCTACCCGCTCTACACCAAATTCTGCAAAAATGCGCGAGAGAACGTTTACCCATGGAAGAACGGAAACGAAAAAGAGGCTCTTAATCTCTTTCTTCAAATGCAAAGAGAAGGCACACAATGCAGTGAATTCACACTTTCAGGCGTTTTATGTGCATGTGCAGCCGAATTTGCAGTTCTTGAATGCAAACAGCTCCATGCTTT...

CDS

Download CDS FASTA

1326 bp · TkA05G448580|TK1151|CDS

ATGGCCCCATCTGGACACCCCAGGAAACCCCTTCATACATGCCGACATACCCTATTCGTCTACCCGCTCTACACCAAATTCTGCAAAAATGCGCGAGAGAACGTTTACCCATGGAAGAACGGAAACGAAAAAGAGGCTCTTAATCTCTTTCTTCAAATGCAAAGAGAAGGCACACAATGCAGTGAATTCACACTTTCAGGCGTTTTATGTGCATGTGCAGCCGAATTTGCAGTTCTTGAATGCAAACAGCTCCATGCTTT...

Protein

Download Protein FASTA

441 aa · TkA05G448580|TK1151|PROTEIN

MAPSGHPRKPLHTCRHTLFVYPLYTKFCKNARENVYPWKNGNEKEALNLFLQMQREGTQCSEFTLSGVLCACAAEFAVLECKQLHAFVLKSSMLSNTFVSTALLDVYAKCNQIKDAISVFEYMPEKSPVTWSSMVAGYLKNELYEEALSMFKKVQITGVEFNQFLISSVLAACAAIAAKIEGMGLVKEGKKYFNMMLQEHNLSPNVVHYSCMVDVYCRTGLINEAKLLIDEMPFEATASIWGSILSSCRVYGNINLAEIA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA05G448580
TK1151 IDTkA05G448580
OH-1004 IDLXL04_022162
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)80.900
Protein coverage (%)TK1151 91.383 / OH-1004 78.889
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA05G448580
LocationChr05:112122728-112124514 (+)
DescriptionSimilar to PCMP-H16: Pentatricopeptide repeat-containing protein At5g04780, mitochondrial
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g04780 Pentatricopeptide repeat-containing protein At5g04780, mitochondrial. No verified direct reference in this release
At1g20230 Pentatricopeptide repeat-containing protein At1g20230. No verified direct reference in this release
At4g02750 Pentatricopeptide repeat-containing protein At4g02750. No verified direct reference in this release
At2g22070 Pentatricopeptide repeat-containing protein At2g22070. No verified direct reference in this release
At5g52630 Putative pentatricopeptide repeat-containing protein At5g52630. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_022162 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009451 RNA modification Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0003723 RNA binding Molecular Function
GO:0008270 zinc ion binding Molecular Function
KEGG gene cross-reference
ath:AT3G24000
ath:AT5G04780
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.625
Rank 1 · TkA05G448580 · TK1151
Plastid0.210
Rank 2 · TkA05G448580 · TK1151
Nucleus0.068
Rank 3 · TkA05G448580 · TK1151
Cytoplasm0.054
Rank 4 · TkA05G448580 · TK1151
Peroxisome0.011
Rank 5 · TkA05G448580 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF17177PPR_long26-122 aa
PF13041PPR_239-73 aa
PF01535PPR39-57 aa
PF12854PPR_139-53 aa
PF23276TPR_2439-68 aa
PF13812PPR_339-58 aa
PF14559TPR_1939-60 aa
PF13176TPR_741-52 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA05G448580PF17177PPR_long261221.2e-0525.5
TkA05G448580PF13041PPR_239733.6e-2175.7
TkA05G448580PF01535PPR39577.1e-2173.7
TkA05G448580PF12854PPR_139534.9e-1658.9
TkA05G448580PF23276TPR_2439682e-0525.2
TkA05G448580PF13812PPR_339580.0004321.0
TkA05G448580PF14559TPR_1939600.0008820.3
TkA05G448580PF13176TPR_741520.07813.8
TkA05G448580PF13041PPR_2961263.6e-2175.7
TkA05G448580PF01535PPR1011267.1e-2173.7
TkA05G448580PF12854PPR_11011234.9e-1658.9
TkA05G448580PF23276TPR_241011262e-0525.2
TkA05G448580PF13812PPR_31011260.0004321.0
TkA05G448580PF29070MSC6_N1011240.001518.4
TkA05G448580PF14559TPR_191031260.0008820.3
TkA05G448580PF13176TPR_71051210.07813.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9LZ19Arabidopsis thalianasp|Q9LZ19|PP364_ARATH Pentatricopeptide repeat-containing protein At5g04780, mitochondrial46.500%Swiss-ProtMedium
Q9LNU6Arabidopsis thalianasp|Q9LNU6|PPR53_ARATH Pentatricopeptide repeat-containing protein At1g2023042.400%Swiss-ProtMedium
Q9SY02Arabidopsis thalianasp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protein At4g0275043.600%Swiss-ProtMedium
Q9SHZ8Arabidopsis thalianasp|Q9SHZ8|PP168_ARATH Pentatricopeptide repeat-containing protein At2g2207042.000%Swiss-ProtMedium
Q9LTF4Arabidopsis thalianasp|Q9LTF4|PP429_ARATH Putative pentatricopeptide repeat-containing protein At5g5263038.800%Swiss-ProtMedium

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