LXL04_022136 | RubberDandelionOmics

Gene overview

LXL04_022136

Reference: OH-1004 Chr: Chr04 Coordinates: 145184539-145185039 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

501 bp · LXL04_022136|LXL04_022136|OH1004|cDNA

ATGGCCGAGGAACAGAAATGGCAGGAAGCAAGCAACCACGTCCTCTGTGCGAATAATTGTGGATTCTCCGGGAGTCCTACCACGCTTGATCTCTGTTCGAAGTGCTACAAAGATCATTGCATGAAGGAAAGGCAGATGTCGACGGCGAAGATCGCCGTCGAGAAGAGCCTACAACACGAATCGGAAACATCTTTACCGGAATCCTCCTCCTCCGATGTAGCATCTGTTTCCGTTTTACCGGATCAGCCGATATCCAAGCC...

CDS

Download CDS FASTA

501 bp · LXL04_022136|LXL04_022136|OH1004|CDS

ATGGCCGAGGAACAGAAATGGCAGGAAGCAAGCAACCACGTCCTCTGTGCGAATAATTGTGGATTCTCCGGGAGTCCTACCACGCTTGATCTCTGTTCGAAGTGCTACAAAGATCATTGCATGAAGGAAAGGCAGATGTCGACGGCGAAGATCGCCGTCGAGAAGAGCCTACAACACGAATCGGAAACATCTTTACCGGAATCCTCCTCCTCCGATGTAGCATCTGTTTCCGTTTTACCGGATCAGCCGATATCCAAGCC...

Protein

Download Protein FASTA

166 aa · LXL04_022136|LXL04_022136|OH1004|PROTEIN

MAEEQKWQEASNHVLCANNCGFSGSPTTLDLCSKCYKDHCMKERQMSTAKIAVEKSLQHESETSLPESSSSDVASVSVLPDQPISKPVDTDIVSPSTAVKPQQRNRCGSCRKRVGLTGFTCKCGTTFCGTHRYPEKHDCTFDYKTVGKEAIARENPVVKAAKLVKI

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_022136`
TK1151 ID	TkA05G447300
OH-1004 ID	LXL04_022136
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_022136

Location Chr04:145184539-145185039 (+)

Description Similar to SAP4: Zinc finger A20 and AN1 domain-containing stress-associated protein 4

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g36320`	May be involved in environmental stress response.	No verified direct reference in this release
`At4g22820`	May be involved in environmental stress response.	No verified direct reference in this release
`At4g12040`	May be involved in environmental stress response.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os02g0195600`	May be involved in environmental stress response.	No verified direct reference in this release
`Os02g0530300`	May be involved in environmental stress response.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_022136 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process Biological Process

GO:0098542 defense response to other organism Biological Process

GO:0005634 nucleus Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0003677 DNA binding Molecular Function

GO:0008270 zinc ion binding Molecular Function

GO:0061630 ubiquitin protein ligase activity Molecular Function

KEGG gene cross-reference

ath:AT2G36320

ath:AT4G12040

ath:AT4G22820

dosa:Os02g0195600

dosa:Os02g0530300

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.725

Rank 1 · LXL04_022136 · OH-1004

Cytoplasm0.345

Rank 2 · LXL04_022136 · OH-1004

Mitochondrion0.047

Rank 3 · LXL04_022136 · OH-1004

Cell membrane0.024

Rank 4 · LXL04_022136 · OH-1004

Golgi apparatus0.018

Rank 5 · LXL04_022136 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01754.24zf-A2015-42 aa

PF01428.24zf-AN1108-144 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_022136	`PF01754.24`	zf-A20	15	42	2.3e-12	47.0
LXL04_022136	`PF01428.24`	zf-AN1	108	144	5.1e-11	43.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9SJM6`	Arabidopsis thaliana	Zinc finger A20 and AN1 domain-containing stress-associated protein 4	46.857%	Swiss-Prot	moderate database homology
`O49663`	Arabidopsis thaliana	Zinc finger A20 and AN1 domain-containing stress-associated protein 9	46.988%	Swiss-Prot	moderate database homology
`Q9SZ69`	Arabidopsis thaliana	Zinc finger A20 and AN1 domain-containing stress-associated protein 7	47.826%	Swiss-Prot	moderate database homology
`Q6H7P8`	Oryza sativa subsp. japonica	Zinc finger A20 and AN1 domain-containing stress-associated protein 4	43.529%	Swiss-Prot	moderate database homology
`Q6H754`	Oryza sativa subsp. japonica	Zinc finger A20 and AN1 domain-containing stress-associated protein 5	47.853%	Swiss-Prot	moderate database homology

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