TkA05G447300 | RubberDandelionOmics

Gene overview

TkA05G447300

Reference: TK1151 Chr: Chr05 Coordinates: 111851754-111852977 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1128 bp · TkA05G447300|TK1151|cDNA

TAAAATTCCAAGCAACCTCCTAGAACCTTCTAATTCCAATAACTAAGTTATCCCACCACCAGTCACCACCACCACCGCCAATTATTCTCCCCTTTCTTTGTTTTTCTTTATCCCTACATTTCCGCCACCACCTAACCCTCAACACCTATATTTCTCCACCCTTCCCCACCGGCCACCTCCCAACAATTCAATCCACCATCCTCCCCTCATACTCCCATCACCGCTTCTGATTTCTCTGCATCTTCTCCGTTCTGGTAAAC...

CDS

Download CDS FASTA

501 bp · TkA05G447300|TK1151|CDS

ATGGCCGAGGAACAGAAATGGCAGGAAGCAAGCAACCACGTCCTCTGTGCGAATAATTGTGGATTCTCCGGGAGTCCTACCACGCTTGATCTCTGTTCGAAGTGCTACAAAGATCATTGCATGAAGGAAAGGCAGATGTCGACGGCGAAGATCGCCGTCGAGAAGAGCCTACAACACGAATCGGAAACATCTTTACCGGAATCCTCCTCCTCCGATGTAGCATCTGTTTCCGTTTTACCGGATCAGCCGATATCCAAGCC...

Protein

Download Protein FASTA

166 aa · TkA05G447300|TK1151|PROTEIN

MAEEQKWQEASNHVLCANNCGFSGSPTTLDLCSKCYKDHCMKERQMSTAKIAVEKSLQHESETSLPESSSSDVASVSVLPDQPISKPVDTDIVSPSTAVKPQQRNRCGSCRKRVGLTGFTCKCGTTFCGTHRYPEKHDCTFDYKTVGKEAIARENPVVKAAKLVKI

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA05G447300`
TK1151 ID	TkA05G447300
OH-1004 ID	LXL04_022136
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA05G447300

Location Chr05:111851754-111852977 (-)

Description Similar to SAP4: Zinc finger A20 and AN1 domain-containing stress-associated protein 4

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g36320`	May be involved in environmental stress response.	No verified direct reference in this release
`At3g52800`	May be involved in environmental stress response.	No verified direct reference in this release
`At4g22820`	May be involved in environmental stress response.	No verified direct reference in this release
`At4g12040`	May be involved in environmental stress response.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os02g0530300`	May be involved in environmental stress response.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_022136 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process Biological Process

GO:0098542 defense response to other organism Biological Process

GO:0005634 nucleus Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0003677 DNA binding Molecular Function

GO:0008270 zinc ion binding Molecular Function

GO:0061630 ubiquitin protein ligase activity Molecular Function

KEGG gene cross-reference

ath:AT2G36320

ath:AT4G12040

ath:AT4G22820

dosa:Os02g0195600

dosa:Os02g0530300

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.725

Rank 1 · TkA05G447300 · TK1151

Cytoplasm0.345

Rank 2 · TkA05G447300 · TK1151

Mitochondrion0.047

Rank 3 · TkA05G447300 · TK1151

Cell membrane0.024

Rank 4 · TkA05G447300 · TK1151

Golgi apparatus0.018

Rank 5 · TkA05G447300 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01754zf-A2015-42 aa

PF01428zf-AN131-42 aa

PF04246RseC_MucC31-54 aa

PF04246RseC_MucC98-125 aa

PF01754zf-A20104-108 aa

PF01428zf-AN1108-144 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA05G447300	`PF01754`	zf-A20	15	42	2.3e-12	47.0
TkA05G447300	`PF01428`	zf-AN1	31	42	5.1e-11	43.2
TkA05G447300	`PF04246`	RseC_MucC	31	54	8.9	6.9
TkA05G447300	`PF04246`	RseC_MucC	98	125	8.9	6.9
TkA05G447300	`PF01754`	zf-A20	104	108	2.3e-12	47.0
TkA05G447300	`PF01428`	zf-AN1	108	144	5.1e-11	43.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SJM6`	Arabidopsis thaliana	sp\|Q9SJM6\|SAP4_ARATH Zinc finger A20 and AN1 domain-containing stress-associated protein 4	46.900%	Swiss-Prot	Medium
`Q94B40`	Arabidopsis thaliana	sp\|Q94B40\|SAP6_ARATH Zinc finger A20 and AN1 domain-containing stress-associated protein 6	48.800%	Swiss-Prot	Medium
`O49663`	Arabidopsis thaliana	sp\|O49663\|SAP9_ARATH Zinc finger A20 and AN1 domain-containing stress-associated protein 9	47.000%	Swiss-Prot	Medium
`Q9SZ69`	Arabidopsis thaliana	sp\|Q9SZ69\|SAP7_ARATH Zinc finger A20 and AN1 domain-containing stress-associated protein 7	47.800%	Swiss-Prot	Medium
`Q6H754`	Oryza sativa subsp. japonica	sp\|Q6H754\|SAP5_ORYSJ Zinc finger A20 and AN1 domain-containing stress-associated protein 5	50.300%	Swiss-Prot	High

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