LXL04_019999 | RubberDandelionOmics

Gene overview

LXL04_019999

Reference: OH-1004 Chr: Chr04 Coordinates: 46869644-46871315 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

591 bp · LXL04_019999|LXL04_019999|OH1004|cDNA

ATGGCCGCCGCGAGATTCATCAAGTGCGTCACCGTCGGCGACGGCGCCGTTGGAAAGACATGCATGCTCATCTCCTACACCAGCAATACATTCCCCACCGATTATGTGCCTACTGTGTTTGATAACTTCAGTGCTAATGTCGTGGTTGGTGAGAGCACTGTAAATCTCGGCCTTTGGGATACTGCAGGTCAGGAGGATTATAATAGACTGAGACCACTGAGTTACAGAGGAGCAGATGTCTTTCTATTGGCTTTTTCTCT...

CDS

Download CDS FASTA

591 bp · LXL04_019999|LXL04_019999|OH1004|CDS

ATGGCCGCCGCGAGATTCATCAAGTGCGTCACCGTCGGCGACGGCGCCGTTGGAAAGACATGCATGCTCATCTCCTACACCAGCAATACATTCCCCACCGATTATGTGCCTACTGTGTTTGATAACTTCAGTGCTAATGTCGTGGTTGGTGAGAGCACTGTAAATCTCGGCCTTTGGGATACTGCAGGTCAGGAGGATTATAATAGACTGAGACCACTGAGTTACAGAGGAGCAGATGTCTTTCTATTGGCTTTTTCTCT...

Protein

Download Protein FASTA

196 aa · LXL04_019999|LXL04_019999|OH1004|PROTEIN

MAAARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVGESTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISRPSYENISKKWISELRHYAPTVPIVLVGTKLDLREDKQYLSDHPNATPITTSQGEELKKTIGAAVYIECSSKTQQNVKAVFDAAIRVVLQPPKLKKRRSKQRLCVYL

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_019999`
TK1151 ID	TkA05G115630
OH-1004 ID	LXL04_019999
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_019999

Location Chr04:46869644-46871315 (-)

Description Similar to RAC2: Rac-like GTP-binding protein RAC2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g35020`	Inactive GDP-bound Rho GTPases reside in the cytosol, are found in a complex with Rho GDP-dissociation inhibitors (Rho GDIs), and are released from the GDI protein in order to translocate to membranes upon activation.	Arabidopsis thaliana Rop GTPases are localized to tips of root hairs and control polar growth.2001 · DOI: 10.1093/emboj/20.11.2779 A ROP GTPase-dependent auxin signaling pathway regulates the subcellular distribution of PIN2 in Arabidopsis roots.2012 · DOI: 10.1016/j.cub.2012.05.019

Rice

Reference gene ID	Possible function	Papers / DOI
`Os02g0312600`	Inactive GDP-bound Rho GTPases reside in the cytosol, are found in a complex with Rho GDP-dissociation inhibitors (Rho GDIs), and are released from the GDI protein in order to translocate to membranes upon activation.	No verified direct reference in this release
`Os02g0834000`	Inactive GDP-bound Rho GTPases reside in the cytosol, are found in a complex with Rho GDP-dissociation inhibitors (Rho GDIs), and are released from the GDI protein in order to translocate to membranes upon activation.	No verified direct reference in this release

Functional annotation source

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Functional annotation source: OH1004 · LXL04_019999 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0007015 actin filament organization Biological Process

GO:0007163 establishment or maintenance of cell polarity Biological Process

GO:0007165 signal transduction Biological Process

GO:0007264 small GTPase-mediated signal transduction Biological Process

GO:0008360 regulation of cell shape Biological Process

GO:0009734 auxin-activated signaling pathway Biological Process

GO:0009834 plant-type secondary cell wall biogenesis Biological Process

GO:0009958 positive gravitropism Biological Process

GO:0010928 regulation of auxin mediated signaling pathway Biological Process

GO:0030865 cortical cytoskeleton organization Biological Process

GO:0032956 regulation of actin cytoskeleton organization Biological Process

GO:0043622 cortical microtubule organization Biological Process

KEGG gene cross-reference

ath:AT4G35020

dosa:Os02g0312600

ghi:107924928

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.633

Rank 1 · LXL04_019999 · OH-1004

Cytoplasm0.339

Rank 2 · LXL04_019999 · OH-1004

Nucleus0.115

Rank 3 · LXL04_019999 · OH-1004

Golgi apparatus0.080

Rank 4 · LXL04_019999 · OH-1004

Endoplasmic reticulum0.051

Rank 5 · LXL04_019999 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00071.29Ras8-178 aa

PF08477.20Roc8-121 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_019999	`PF00071.29`	Ras	8	178	4.6e-50	170.1
LXL04_019999	`PF08477.20`	Roc	8	121	5.3e-24	85.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q38912`	Arabidopsis thaliana	Rac-like GTP-binding protein ARAC3	83.425%	Swiss-Prot	strong database homology
`Q6Z7L8`	Oryza sativa subsp. japonica	Rac-like GTP-binding protein 7	83.249%	Swiss-Prot	strong database homology
`Q6EP31`	Oryza sativa subsp. japonica	Rac-like GTP-binding protein 5	87.079%	Swiss-Prot	strong database homology

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