LXL04_009886 | RubberDandelionOmics

Gene overview

LXL04_009886

Reference: OH-1004 Chr: Chr02 Coordinates: 135354184-135359195 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1626 bp · LXL04_009886|LXL04_009886|OH1004|cDNA

ATGAATGGCGAGATTGTGGCTGTCACTTCCATGGCTCCGGCGAGCGGTACCGTCTCCAGTGAAGATCACCTCTTACCGCATCTCTGGTCGATTAAAGCGGTCCTAGACAAGCTGGATTTATCACAAAATGACGGGGCGGATGTATACGAACTTGTATCTCACTGCATCAAAACCTTCAAGCATAATCCAGATTATCGAAACGATATCAGATTTCTCAAGATTTGGCTCATATATATGGATTTTAGTCCAAACTATGAGCT...

CDS

Download CDS FASTA

1626 bp · LXL04_009886|LXL04_009886|OH1004|CDS

ATGAATGGCGAGATTGTGGCTGTCACTTCCATGGCTCCGGCGAGCGGTACCGTCTCCAGTGAAGATCACCTCTTACCGCATCTCTGGTCGATTAAAGCGGTCCTAGACAAGCTGGATTTATCACAAAATGACGGGGCGGATGTATACGAACTTGTATCTCACTGCATCAAAACCTTCAAGCATAATCCAGATTATCGAAACGATATCAGATTTCTCAAGATTTGGCTCATATATATGGATTTTAGTCCAAACTATGAGCT...

Protein

Download Protein FASTA

541 aa · LXL04_009886|LXL04_009886|OH1004|PROTEIN

MNGEIVAVTSMAPASGTVSSEDHLLPHLWSIKAVLDKLDLSQNDGADVYELVSHCIKTFKHNPDYRNDIRFLKIWLIYMDFSPNYELVFREIEQLKICLDKALLYESYALFLEAKGMMDEAHLVYLSGISRVKFCFRNAEPIEHLKKAHAYFLERMQAIIDSCTHNKINGGSTLNSGSSYMNPWSISTINNLLQKMNSQISKYEGYRASSKCYPGKVPLSSLQKSARNKVIDIGGKKYQIKGCAGKGGFAQVYKACINNN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_009886`
TK1151 ID	TkA03G480020
OH-1004 ID	LXL04_009886
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 98.152 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_009886

Location Chr02:135354184-135359195 (-)

Description Similar to BUB1: Mitotic checkpoint serine/threonine-protein kinase BUB1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g20635`	Serine/threonine-protein kinase that performs 2 crucial functions during mitosis: it is essential for spindle-assembly checkpoint signaling and for correct chromosome alignment.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_009886 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0007059 chromosome segregation Biological Process

GO:0007063 regulation of sister chromatid cohesion Biological Process

GO:0007094 mitotic spindle assembly checkpoint signaling Biological Process

GO:0016236 macroautophagy Biological Process

GO:0031134 sister chromatid biorientation Biological Process

GO:0034501 protein localization to kinetochore Biological Process

GO:0045143 homologous chromosome segregation Biological Process

GO:0051301 cell division Biological Process

GO:0051754 meiotic sister chromatid cohesion, centromeric Biological Process

GO:0051983 regulation of chromosome segregation Biological Process

GO:1905318 meiosis I spindle assembly checkpoint signaling Biological Process

GO:1990758 mitotic sister chromatid biorientation Biological Process

KEGG gene cross-reference

ath:AT2G20635

hsa:699

mmu:12235

sce:YGR188C

spo:2538736

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.497

Rank 1 · LXL04_009886 · OH-1004

Nucleus0.474

Rank 2 · LXL04_009886 · OH-1004

Mitochondrion0.071

Rank 3 · LXL04_009886 · OH-1004

Cell membrane0.070

Rank 4 · LXL04_009886 · OH-1004

Endoplasmic reticulum0.054

Rank 5 · LXL04_009886 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF08311.19Mad3_BUB1_I20-129 aa

PF00069.32Pkinase238-455 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_009886	`PF08311.19`	Mad3_BUB1_I	20	129	8.4e-22	78.1
LXL04_009886	`PF00069.32`	Pkinase	238	455	6.6e-14	52.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`F4IVI0`	Arabidopsis thaliana	Mitotic checkpoint serine/threonine-protein kinase BUB1	55.916%	Swiss-Prot	strong database homology

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