LXL04_005503 | RubberDandelionOmics

Gene overview

LXL04_005503

Reference: OH-1004 Chr: Chr01 Coordinates: 165680444-165682487 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

453 bp · LXL04_005503|LXL04_005503|OH1004|cDNA

ATGGCTTCTTCTTCATCACTCACGGTGGTAGTTGCGCTGATGGTGATGTCCGTATCAGTGTTAACGGCACAGGCGCAGACACAGAATTGTGCGTCGAAGCTAATCCCGTGCGCTCAGTACCTCAACGCCACCACAAAGCCGCCGAACTCCTGTTGCGATCCGATCAAAGAGGCGGTGACCACCGATCTACAATGTCTGTGTGGCCTCTATGAGAATCCTTCCTTCTTGGCTGGTCTCGGAATCAATGTTGCTCAGGCACT...

CDS

Download CDS FASTA

453 bp · LXL04_005503|LXL04_005503|OH1004|CDS

ATGGCTTCTTCTTCATCACTCACGGTGGTAGTTGCGCTGATGGTGATGTCCGTATCAGTGTTAACGGCACAGGCGCAGACACAGAATTGTGCGTCGAAGCTAATCCCGTGCGCTCAGTACCTCAACGCCACCACAAAGCCGCCGAACTCCTGTTGCGATCCGATCAAAGAGGCGGTGACCACCGATCTACAATGTCTGTGTGGCCTCTATGAGAATCCTTCCTTCTTGGCTGGTCTCGGAATCAATGTTGCTCAGGCACT...

Protein

Download Protein FASTA

150 aa · LXL04_005503|LXL04_005503|OH1004|PROTEIN

MASSSSLTVVVALMVMSVSVLTAQAQTQNCASKLIPCAQYLNATTKPPNSCCDPIKEAVTTDLQCLCGLYENPSFLAGLGINVAQALRLPRLCDIPSDVSACDNAQSPSGSTTQPPPGRTPGAGNSAGNVASSGVIGLVLVLVSACVMLF

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_005503`
TK1151 ID	TkA01G041220
OH-1004 ID	LXL04_005503
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_005503

Location Chr01:165680444-165682487 (+)

Description Similar to VAS: Lipid transfer-like protein VAS

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g62790`	Probable lipid transfer protein.	No verified direct reference in this release
`At1g18280`	Lipid transfer protein involved in seed and ovule maturation and development, probably by regulating the fatty acids homeostasis during suberin and sporopollenin biosynthesis or deposition.	No verified direct reference in this release
`At1g73550`	Probable lipid transfer protein.	No verified direct reference in this release
`At1g73560`	Probable lipid transfer protein.	No verified direct reference in this release
`At4g12360`	Probable lipid transfer protein.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_005503 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006508 proteolysis Biological Process

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0016020 membrane Cellular Component

GO:0098552 side of membrane Cellular Component

GO:0008233 peptidase activity Molecular Function

KEGG gene cross-reference

ath:AT1G18280

ath:AT1G62790

ath:AT1G73550

ath:AT1G73560

ath:AT4G12360

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.761

Rank 1 · LXL04_005503 · OH-1004

Cytoplasm0.093

Rank 2 · LXL04_005503 · OH-1004

Endoplasmic reticulum0.090

Rank 3 · LXL04_005503 · OH-1004

Extracellular0.074

Rank 4 · LXL04_005503 · OH-1004

Lysosome / Vacuole0.049

Rank 5 · LXL04_005503 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF14368.12LTP_211-102 aa

PF00234.28Tryp_alpha_amyl31-98 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_005503	`PF14368.12`	LTP_2	11	102	1.8e-17	64.0
LXL04_005503	`PF00234.28`	Tryp_alpha_amyl	31	98	9.3e-06	26.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q6NLF7`	Arabidopsis thaliana	Non-specific lipid transfer protein GPI-anchored 7	38.514%	Swiss-Prot	moderate database homology
`Q9LE56`	Arabidopsis thaliana	Non-specific lipid transfer protein GPI-anchored 3	37.079%	Swiss-Prot	moderate database homology
`B3H587`	Arabidopsis thaliana	Non-specific lipid transfer protein GPI-anchored 8	28.676%	Swiss-Prot	weak database homology
`Q1PFD8`	Arabidopsis thaliana	Non-specific lipid transfer protein GPI-anchored 9	38.614%	Swiss-Prot	moderate database homology
`Q9STH5`	Arabidopsis thaliana	Non-specific lipid transfer protein GPI-anchored 24	29.508%	Swiss-Prot	weak database homology

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