LXL04_000855 | RubberDandelionOmics

Gene overview

LXL04_000855

Reference: OH-1004 Chr: Chr01 Coordinates: 15819273-15821840 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

807 bp · LXL04_000855|LXL04_000855|OH1004|cDNA

ATGCATGTAGTAGGAGAAGAGAGGATTCAGGTAGATGGTAGATTCGCCCAACCCCATCTTGTTGAATATGAAATCTCCATCGTGGAGTACAAAACTCCACCCCATCCTTCCGAACCATTCCCAAACGAGATCTCTCGTCTCTCTCTCCAACTTCAGAGAGATATGAGTACAGCAATTTCTTTACCAGCTGTGTATACTCGTATTCCGTCGAACACCCAAATCGTTAGAGCCGCCAGTTCGTCGTTTTCTGCGTCTATCGC...

CDS

Download CDS FASTA

807 bp · LXL04_000855|LXL04_000855|OH1004|CDS

ATGCATGTAGTAGGAGAAGAGAGGATTCAGGTAGATGGTAGATTCGCCCAACCCCATCTTGTTGAATATGAAATCTCCATCGTGGAGTACAAAACTCCACCCCATCCTTCCGAACCATTCCCAAACGAGATCTCTCGTCTCTCTCTCCAACTTCAGAGAGATATGAGTACAGCAATTTCTTTACCAGCTGTGTATACTCGTATTCCGTCGAACACCCAAATCGTTAGAGCCGCCAGTTCGTCGTTTTCTGCGTCTATCGC...

Protein

Download Protein FASTA

268 aa · LXL04_000855|LXL04_000855|OH1004|PROTEIN

MHVVGEERIQVDGRFAQPHLVEYEISIVEYKTPPHPSEPFPNEISRLSLQLQRDMSTAISLPAVYTRIPSNTQIVRAASSSFSASIALKSTNNRHGKGAVGTLSQKKLVLPRHRSRCKCSSTPGGPVPGTPPLFTKKMENTGENESKQVLDAFFLGKAFAEALNERVESAVGEFLSTVGRLQSEQQKQVQEFQDEVVERAKKAKDKAAREAMEAQGLVPKSAPSSVSSPIIAIDEVTISPSSSTQDSKDQGPGNDTSTEP...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_000855`
TK1151 ID	TkA01G580350
OH-1004 ID	LXL04_000855
Relationship / confidence	Rbh Sequence Supported / Probable
Protein identity (%)	93.900
Protein coverage (%)	TK1151 100.000 / OH-1004 79.851 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_000855

Location Chr01:15819273-15821840 (-)

Description Similar to At4g13200: Uncharacterized protein At4g13200, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g13200`	Uncharacterized protein At4g13200, chloroplastic.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_000855 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0010027 thylakoid membrane organization Biological Process

GO:0005829 cytosol Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009535 chloroplast thylakoid membrane Cellular Component

GO:0009579 thylakoid Cellular Component

GO:0010287 plastoglobule Cellular Component

GO:0031969 chloroplast membrane Cellular Component

KEGG gene cross-reference

ath:AT4G13200

syn:sll1769

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.961

Rank 1 · LXL04_000855 · OH-1004

Nucleus0.040

Rank 2 · LXL04_000855 · OH-1004

Mitochondrion0.040

Rank 3 · LXL04_000855 · OH-1004

Cytoplasm0.027

Rank 4 · LXL04_000855 · OH-1004

Cell membrane0.014

Rank 5 · LXL04_000855 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF20711.3DUF6825146-245 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_000855	`PF20711.3`	DUF6825	146	245	1.4e-33	116.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8LDV3`	Arabidopsis thaliana	Uncharacterized protein At4g13200, chloroplastic	60.550%	Swiss-Prot	weak database homology

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