LXL04_036781 | RubberDandelionOmics

Gene overview

LXL04_036781

Reference: OH-1004 Chr: Chr08 Coordinates: 48248547-48250021 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1098 bp · LXL04_036781|LXL04_036781|OH1004|cDNA

ATGAATACACCACAAGAAAGGGAGGTATGTAAGGAAGAGGTAGAATTACTAAAGGTTATGCAAATGGTAGCGGGGACAATACTTCCAATGGTCATGAAAACTGCTATAGAACTTGATCTATTTGAAATCATGGTCAAAGTCACTAACAGTGGTGGTCAATTCACTTCTTCAGATATCGTTTCGTGTTTGCCTACACAAAACCCACAAACTCCAATCATAATCGAAAGAATCCTTCGGTATCTTGCTAGCAAATCAATTCT...

CDS

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1098 bp · LXL04_036781|LXL04_036781|OH1004|CDS

ATGAATACACCACAAGAAAGGGAGGTATGTAAGGAAGAGGTAGAATTACTAAAGGTTATGCAAATGGTAGCGGGGACAATACTTCCAATGGTCATGAAAACTGCTATAGAACTTGATCTATTTGAAATCATGGTCAAAGTCACTAACAGTGGTGGTCAATTCACTTCTTCAGATATCGTTTCGTGTTTGCCTACACAAAACCCACAAACTCCAATCATAATCGAAAGAATCCTTCGGTATCTTGCTAGCAAATCAATTCT...

Protein

Download Protein FASTA

365 aa · LXL04_036781|LXL04_036781|OH1004|PROTEIN

MNTPQEREVCKEEVELLKVMQMVAGTILPMVMKTAIELDLFEIMVKVTNSGGQFTSSDIVSCLPTQNPQTPIIIERILRYLASKSILTSKFSTNENGDTNKSYAMTPICKYFVNNEEGASFASFFLFQNDKVVIDSWYHLKEAVLEGGTPFNKAHGENVFEYQAKDKRFGEIFNKAMYGNTAILMKMVLEKYKGFEGVEKLVDVGGGLGATLGIIHSKYPNIKGVNFDMPHVIKDAPLCLGVEHVGGDMFQSVPKGDVIF...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_036781`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_036781

Location Chr08:48248547-48250021 (+)

Description Similar to COMT1: Caffeic acid 3-O-methyltransferase

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g54160`	Methylates OH residues of flavonoid compounds.	Functional expression of an Arabidopsis cDNA clone encoding a flavonol 3'-O-methyltransferase and characterization of the gene product.2000 · DOI: 10.1006/abbi.1999.1681 A new Arabidopsis thaliana mutant deficient in the expression of O-methyltransferase impacts lignins and sinapoyl esters.2003 · DOI: 10.1023/a:1023022825098 Insights into lignin primary structure and deconstruction from Arabidopsis thaliana COMT (caffeic acid O-methyl transferase) mutant Atomt1.2010 · DOI: 10.1039/c004817h The role of CCoAOMT1 and COMT1 in Arabidopsis anthers.2012 · DOI: 10.1007/s00425-011-1586-6 Caffeic acid O-methyltransferase is involved in the synthesis of melatonin by methylating N-acetylserotonin in Arabidopsis.2014 · DOI: 10.1111/jpi.12160 Cloning of Arabidopsis serotonin N-acetyltransferase and its role with caffeic acid O-methyltransferase in the biosynthesis of melatonin in vitro despite their different subcellular localizations.2014 · DOI: 10.1111/jpi.12181 Daily rhythms of phytomelatonin signaling modulate diurnal stomatal closure via regulating reactive oxygen species dynamics in Arabidopsis.2020 · DOI: 10.1111/jpi.12640 Melatonin Represses Oil and Anthocyanin Accumulation in Seeds.2020 · DOI: 10.1104/pp.20.00117

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_036781 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006970 response to osmotic stress Biological Process

GO:0007623 circadian rhythm Biological Process

GO:0009809 lignin biosynthetic process Biological Process

GO:0010344 seed oilbody biogenesis Biological Process

GO:0010555 response to mannitol Biological Process

GO:0030187 melatonin biosynthetic process Biological Process

GO:0031537 regulation of anthocyanin metabolic process Biological Process

GO:0032259 methylation Biological Process

GO:0042428 serotonin metabolic process Biological Process

GO:0048354 mucilage biosynthetic process involved in seed coat development Biological Process

GO:0051555 flavonol biosynthetic process Biological Process

GO:0090333 regulation of stomatal closure Biological Process

KEGG gene cross-reference

ath:AT5G54160

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.872

Rank 1 · LXL04_036781 · OH-1004

Nucleus0.290

Rank 2 · LXL04_036781 · OH-1004

Endoplasmic reticulum0.049

Rank 3 · LXL04_036781 · OH-1004

Mitochondrion0.035

Rank 4 · LXL04_036781 · OH-1004

Cell membrane0.032

Rank 5 · LXL04_036781 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF08100.19Dimerisation20-114 aa

PF00891.25Methyltransf_2137-344 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_036781	`PF08100.19`	Dimerisation	20	114	1.9e-14	54.1
LXL04_036781	`PF00891.25`	Methyltransf_2	137	344	8.9e-64	215.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9FK25`	Arabidopsis thaliana	Flavone 3'-O-methyltransferase 1	50.980%	Swiss-Prot	strong database homology

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