LXL04_035703 | RubberDandelionOmics

Gene overview

LXL04_035703

Reference: OH-1004 Chr: Chr08 Coordinates: 27444842-27447957 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1584 bp · LXL04_035703|LXL04_035703|OH1004|cDNA

ATGAAAGTGATTAGAGATCGATCGATGGAAAGAAATGCTCTTGGTAGTTTGCTCTTCTCGATGGTAATCATGCAAGCTTACTTTACTACAATCAATGCTTCTCTTGAATCAGATATCATTTGCCTAAAATCCATTAAGGAATCCCTAGAAGACCCTCTGAATATTTTTTCTTCCTGGGtttttaaaaacgacactcaTGAAGGTTTCTTCTGCGAATTTCATGGCGTCGGATGTTGGCACTATAATAGTATAGCTACTAT...

CDS

Download CDS FASTA

1584 bp · LXL04_035703|LXL04_035703|OH1004|CDS

ATGAAAGTGATTAGAGATCGATCGATGGAAAGAAATGCTCTTGGTAGTTTGCTCTTCTCGATGGTAATCATGCAAGCTTACTTTACTACAATCAATGCTTCTCTTGAATCAGATATCATTTGCCTAAAATCCATTAAGGAATCCCTAGAAGACCCTCTGAATATTTTTTCTTCCTGGGTTTTTAAAAACGACACTCATGAAGGTTTCTTCTGCGAATTTCATGGCGTCGGATGTTGGCACTATAATAGTATAGCTACTAT...

Protein

Download Protein FASTA

527 aa · LXL04_035703|LXL04_035703|OH1004|PROTEIN

MKVIRDRSMERNALGSLLFSMVIMQAYFTTINASLESDIICLKSIKESLEDPLNIFSSWVFKNDTHEGFFCEFHGVGCWHYNSIATIQLAGTRLRGPFPVGIKNCNGMTYLDLSRNYLSGPIPADVGDGLRFMVNLDLSNNNLSGPIPQSIVNWKYINFLRLDHNHLTGQIPPDFGGLGRIKVFNVANNRLSGFVPVIPGSNLSAESYANNLGLCGGPLKACKEDSHGDLFLSGFEVGFPLFTILNSMDQVFKWKILAGT...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_035703`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_035703

Location Chr08:27444842-27447957 (+)

Description Similar to At5g48380: Probably inactive leucine-rich repeat receptor-like protein kinase At5g48380

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g48380`	Probably inactive leucine-rich repeat receptor-like protein kinase At5g48380.	No verified direct reference in this release
`At3g28450`	Pseudokinases lacking protein kinase activity and unable to bind ATP-analogs.	Structure of the pseudokinase domain of BIR2, a regulator of BAK1-mediated immune signaling in Arabidopsis.2014 · DOI: 10.1016/j.jsb.2014.02.005
`At1g69990`	Probable LRR receptor-like serine/threonine-protein kinase At1g69990.	No verified direct reference in this release
`At1g27190`	Probable inactive receptor kinase At1g27190.	No verified direct reference in this release
`At5g65830`	Receptor-like protein 57.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_035703 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006952 defense response Biological Process

GO:0009626 plant-type hypersensitive response Biological Process

GO:0031348 negative regulation of defense response Biological Process

GO:0042742 defense response to bacterium Biological Process

GO:0045088 regulation of innate immune response Biological Process

GO:1900150 regulation of defense response to fungus Biological Process

GO:1900425 negative regulation of defense response to bacterium Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0009507 chloroplast Cellular Component

KEGG gene cross-reference

ath:AT1G69990

ath:AT3G28450

ath:AT5G48380

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.744

Rank 1 · LXL04_035703 · OH-1004

Endoplasmic reticulum0.110

Rank 2 · LXL04_035703 · OH-1004

Cytoplasm0.087

Rank 3 · LXL04_035703 · OH-1004

Extracellular0.057

Rank 4 · LXL04_035703 · OH-1004

Lysosome / Vacuole0.051

Rank 5 · LXL04_035703 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF08263.18LRRNT_236-79 aa

PF13855.13LRR_885-143 aa

PF08263.18LRRNT_2293-334 aa

PF12799.14LRR_4362-406 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_035703	`PF08263.18`	LRRNT_2	36	79	2.7e-14	53.9
LXL04_035703	`PF13855.13`	LRR_8	85	143	1.9e-10	41.1
LXL04_035703	`PF08263.18`	LRRNT_2	293	334	2.7e-14	53.9
LXL04_035703	`PF12799.14`	LRR_4	362	406	7.7e-10	39.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9ASS4`	Arabidopsis thaliana	Probably inactive leucine-rich repeat receptor-like protein kinase At5g48380	41.379%	Swiss-Prot	weak database homology
`Q9LSI9`	Arabidopsis thaliana	Inactive LRR receptor-like serine/threonine-protein kinase BIR2	42.857%	Swiss-Prot	weak database homology
`C0LGI5`	Arabidopsis thaliana	Probable LRR receptor-like serine/threonine-protein kinase At1g69990	38.756%	Swiss-Prot	weak database homology
`O04567`	Arabidopsis thaliana	Probable inactive receptor kinase At1g27190	40.212%	Swiss-Prot	weak database homology
`Q9FH86`	Arabidopsis thaliana	Receptor-like protein 57	35.965%	Swiss-Prot	weak database homology

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