LXL04_035554 | RubberDandelionOmics

Gene overview

LXL04_035554

Reference: OH-1004 Chr: Chr08 Coordinates: 24485402-24488745 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2286 bp · LXL04_035554|LXL04_035554|OH1004|cDNA

ATGGCGGCCTTTGCATTGTTTGTGGGGTTCGTTGTTGGGGCATTAGCTGTAATCGGTGTTGAAGTTTTGGGAGTATTGTTCTTCATACGAAAATTAAGTAGAAAGGTGAAGGAAGATGATCTTAAGGTCGCGAAATCTGTGTCGTCTGAAAGAGAGGAACTCCAATTTTCATTCCCCAACAAACAGGGTTGGGTTTGGATTTTAGAAAAGGAAAAGATCCCAAAGACTTCACCATCTAGTGATAAAGGACCACGTCTACA...

CDS

Download CDS FASTA

2286 bp · LXL04_035554|LXL04_035554|OH1004|CDS

ATGGCGGCCTTTGCATTGTTTGTGGGGTTCGTTGTTGGGGCATTAGCTGTAATCGGTGTTGAAGTTTTGGGAGTATTGTTCTTCATACGAAAATTAAGTAGAAAGGTGAAGGAAGATGATCTTAAGGTCGCGAAATCTGTGTCGTCTGAAAGAGAGGAACTCCAATTTTCATTCCCCAACAAACAGGGTTGGGTTTGGATTTTAGAAAAGGAAAAGATCCCAAAGACTTCACCATCTAGTGATAAAGGACCACGTCTACA...

Protein

Download Protein FASTA

761 aa · LXL04_035554|LXL04_035554|OH1004|PROTEIN

MAAFALFVGFVVGALAVIGVEVLGVLFFIRKLSRKVKEDDLKVAKSVSSEREELQFSFPNKQGWVWILEKEKIPKTSPSSDKGPRLQKRKIEVLEVSPVRKHASIKDLSLIITEPDGTLTKIPLSGCTAEAVSATNLPSRKWAKKYPVKLENKSSVLYHGSKLFYLYFETSCEKESWCKALRLASCDDKEKLKWFHKSRADFHNYLGSLNVEYPSFLKPSIGFNQETGDKTIKIDTSSSKVRHFLKKLAKKTSKAGKEDK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_035554`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID	`LXL04_035554`
Location	Chr08:24485402-24488745 (-)
Description	Similar to Tex2: Testis-expressed protein 2
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_035554` · GCA_047496595.1_OSU_TarKok_2.0.
GO annotations (OH1004 source)	GO:0006665 sphingolipid metabolic process Biological Process GO:0006869 lipid transport Biological Process GO:0007165 signal transduction Biological Process GO:0035621 ER to Golgi ceramide transport Biological Process GO:1990854 vacuole-ER tethering Biological Process GO:0005737 cytoplasm Cellular Component GO:0005783 endoplasmic reticulum Cellular Component GO:0005789 endoplasmic reticulum membrane Cellular Component GO:0016020 membrane Cellular Component GO:0031965 nuclear membrane Cellular Component GO:0033116 endoplasmic reticulum-Golgi intermediate compartment membrane Cellular Component GO:0071561 nucleus-vacuole junction Cellular Component
KEGG gene cross-reference	hsa:55852 mmu:21763 sce:YPR091C spo:2540553 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.310

Rank 1 · LXL04_035554 · OH-1004

Golgi apparatus0.263

Rank 2 · LXL04_035554 · OH-1004

Cell membrane0.259

Rank 3 · LXL04_035554 · OH-1004

Cytoplasm0.235

Rank 4 · LXL04_035554 · OH-1004

Nucleus0.129

Rank 5 · LXL04_035554 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF23065.2PH_SMPa60-186 aa

PF26547.1PDZD8_N497-569 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_035554	`PF23065.2`	PH_SMPa	60	186	2.6e-54	183.6
LXL04_035554	`PF26547.1`	PDZD8_N	497	569	1.8e-14	54.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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