Gene Card
Gene overview
cDNA / CDS / Protein Sequences
996 bp · LXL04_032316|LXL04_032316|OH1004|cDNA
ATGGTGGTGGCAACTCAAATGAGCCCAATTCATGTCGAAAAGATTCGAGAGATAAAGATACCAACAATTGATCTTTCTGGAAAAGAGTCATCACAAGTGTCAAAGCTCATCGTAGAAGCTTGCGAAGAATATGGTTTCTTCAAAGTCATCAACCATGGCGTACCTCATCACATTATCAAAACAATGAAAGATGAAAGCTTTCACTTTTTCCGTAAACCCTTACCGGAAAAACAACGGGTAGTCTCGACGAAACCCTTTGG...
996 bp · LXL04_032316|LXL04_032316|OH1004|CDS
ATGGTGGTGGCAACTCAAATGAGCCCAATTCATGTCGAAAAGATTCGAGAGATAAAGATACCAACAATTGATCTTTCTGGAAAAGAGTCATCACAAGTGTCAAAGCTCATCGTAGAAGCTTGCGAAGAATATGGTTTCTTCAAAGTCATCAACCATGGCGTACCTCATCACATTATCAAAACAATGAAAGATGAAAGCTTTCACTTTTTCCGTAAACCCTTACCGGAAAAACAACGGGTAGTCTCGACGAAACCCTTTGG...
Protein
Download Protein FASTA331 aa · LXL04_032316|LXL04_032316|OH1004|PROTEIN
MVVATQMSPIHVEKIREIKIPTIDLSGKESSQVSKLIVEACEEYGFFKVINHGVPHHIIKTMKDESFHFFRKPLPEKQRVVSTKPFGYGNKNIGLSGDTGELEYLLLQTNPNAIDHNSKLISSSIASRFSSTVDKYVEAVRGLACEILALMAKGMGVPPSVFTTFLTDNDTDSLFRLNHYPPLTATSSSSSFHRGNTIGFGEHSDPQILTLLASNGVPGLQILSGNGNWVPVNPDPQAFCVIVGDLLQVMTNGRFKSVRH...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_032316 |
|---|---|
| TK1151 ID | TkA08G165490 |
| OH-1004 ID | LXL04_032316 |
| Relationship / confidence | Rbh Sequence Supported / Probable |
| Protein identity (%) | 93.400 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_032316 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr07:20360256-20370017 (-) | |||||||||
| Description | Similar to GA2OX2: Gibberellin 2-beta-dioxygenase 2 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0009416 response to light stimulus Biological Process GO:0009639 response to red or far red light Biological Process GO:0009686 gibberellin biosynthetic process Biological Process GO:0045487 gibberellin catabolic process Biological Process GO:0005737 cytoplasm Cellular Component GO:0009507 chloroplast Cellular Component GO:0016706 2-oxoglutarate-dependent dioxygenase activity Molecular Function GO:0016707 gibberellin 3-beta-dioxygenase activity Molecular Function GO:0045543 gibberellin 2-beta-dioxygenase activity Molecular Function GO:0046872 metal ion binding Molecular Function | |||||||||
| KEGG gene cross-reference | ath:AT1G02400 ath:AT1G47990 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF14226.13DIOX_N20-90 aaPF03171.272OG-FeII_Oxy172-280 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_032316 | PF14226.13 | DIOX_N | 20 | 90 | 2.8e-18 | 67.4 |
| LXL04_032316 | PF03171.27 | 2OG-FeII_Oxy | 172 | 280 | 1.4e-25 | 90.2 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.