LXL04_032190 | RubberDandelionOmics

Gene overview

LXL04_032190

Reference: OH-1004 Chr: Chr07 Coordinates: 18468184-18470114 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1158 bp · LXL04_032190|LXL04_032190|OH1004|cDNA

ATGACTACGTGTTCATCCTTACAAACTTATCTCCTTTCCTTGTTTCTAGTTATCATGTTGATGATCTTTTTTCGTATGAAAAGCAAGAACAGAAAGAACCTTCCACCATCTCCACGAAAACTACCAATCATTGGAAACTTCCACCAACTAGGTTCAAACCCGAATCAATCTCTCCACATCTTGTCCCAAAAACATGGTCCACTCATGCTCCTCCACCTTGGTAGCATACCCATGCTTATAGCTTCTTCGGCAGAAGTAGC...

CDS

Download CDS FASTA

1158 bp · LXL04_032190|LXL04_032190|OH1004|CDS

ATGACTACGTGTTCATCCTTACAAACTTATCTCCTTTCCTTGTTTCTAGTTATCATGTTGATGATCTTTTTTCGTATGAAAAGCAAGAACAGAAAGAACCTTCCACCATCTCCACGAAAACTACCAATCATTGGAAACTTCCACCAACTAGGTTCAAACCCGAATCAATCTCTCCACATCTTGTCCCAAAAACATGGTCCACTCATGCTCCTCCACCTTGGTAGCATACCCATGCTTATAGCTTCTTCGGCAGAAGTAGC...

Protein

Download Protein FASTA

385 aa · LXL04_032190|LXL04_032190|OH1004|PROTEIN

MTTCSSLQTYLLSLFLVIMLMIFFRMKSKNRKNLPPSPRKLPIIGNFHQLGSNPNQSLHILSQKHGPLMLLHLGSIPMLIASSAEVAQEIFKTHDLSFSSRPNLTIPNILTYGNKDIAFAPYGEYWRQMKSIVAVHLLSNARVKSFRQVREEELSRMIGVLEESGGSLVDMGSLLMSLANNTICRVAVGRALSGLEKNARKIAKEFDEFLDDIVEDHLNKKRCDGAANEVQDLVDVLLDVQLDKTIDFNFQRDTIKAVIL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_032190`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_032190

Location Chr07:18468184-18470114 (+)

Description Similar to Cytochrome P450 Tp4149

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g48280`	Cytochrome P450 71A25.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_032190 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0016114 terpenoid biosynthetic process Biological Process

GO:0051762 sesquiterpene biosynthetic process Biological Process

GO:0000137 Golgi cis cisterna Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0016020 membrane Cellular Component

GO:0004497 monooxygenase activity Molecular Function

GO:0005506 iron ion binding Molecular Function

GO:0016491 oxidoreductase activity Molecular Function

GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen Molecular Function

GO:0016712 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen Molecular Function

GO:0020037 heme binding Molecular Function

KEGG gene cross-reference

ath:AT3G48280

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.928

Rank 1 · LXL04_032190 · OH-1004

Cytoplasm0.035

Rank 2 · LXL04_032190 · OH-1004

Cell membrane0.035

Rank 3 · LXL04_032190 · OH-1004

Plastid0.029

Rank 4 · LXL04_032190 · OH-1004

Golgi apparatus0.021

Rank 5 · LXL04_032190 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00067.28p45035-197 aa

PF00067.28p450195-383 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_032190	`PF00067.28`	p450	35	197	2.9e-80	271.0
LXL04_032190	`PF00067.28`	p450	195	383	2.9e-80	271.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9STK8`	Arabidopsis thaliana	Cytochrome P450 71A25	44.282%	Swiss-Prot	moderate database homology

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