LXL04_031139 | RubberDandelionOmics

Gene overview

LXL04_031139

Reference: OH-1004 Chr: Chr07 Coordinates: 1157238-1171222 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2397 bp · LXL04_031139|LXL04_031139|OH1004|cDNA

ATGGAAAACCATGAAGAAACCACCACCCCCACGCCTATGACGACTAAAGTTAGCACGGCGGCCAAGAAGGCGCTTTTAATCTTGAGCTGTATCTTGTTAGCCATCGGAAACTGTGGCGGCCCTTTGATCACGCGGCTTTACTTTATCCACGGTGGCAATCGCGTCTGGTTGTCCTCGTCCCTAGAAACCGCTGGATGGCCGTTTTTTCTTGTTGTCCACCTCATTCTCTACTTCCACCGCCTTCGTGCCGCCGGAAAAGA...

CDS

Download CDS FASTA

2397 bp · LXL04_031139|LXL04_031139|OH1004|CDS

ATGGAAAACCATGAAGAAACCACCACCCCCACGCCTATGACGACTAAAGTTAGCACGGCGGCCAAGAAGGCGCTTTTAATCTTGAGCTGTATCTTGTTAGCCATCGGAAACTGTGGCGGCCCTTTGATCACGCGGCTTTACTTTATCCACGGTGGCAATCGCGTCTGGTTGTCCTCGTCCCTAGAAACCGCTGGATGGCCGTTTTTTCTTGTTGTCCACCTCATTCTCTACTTCCACCGCCTTCGTGCCGCCGGAAAAGA...

Protein

Download Protein FASTA

798 aa · LXL04_031139|LXL04_031139|OH1004|PROTEIN

MENHEETTTPTPMTTKVSTAAKKALLILSCILLAIGNCGGPLITRLYFIHGGNRVWLSSSLETAGWPFFLVVHLILYFHRLRAAGKDGNNKHATKFIYMRPRLFFAVAFIGVLTGLDDYLYAYGVARLPISTSALILAPHLAFVAVFAYLLVKQKFTPYSINAVVLLTVGAGVLALHTSSDRPERERVTDKVIPREATDFELGPTKYYTILCLSALLWQCFFMGAIGVIFCASSLLSGIIIAALLPVTEILAVVFYKEKF...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_031139`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_031139

Location Chr07:1157238-1171222 (+)

Description Similar to PUP3: Purine permease 3

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g28220`	May be involved in transport of purine derivatives during pollen germination and tube elongation.	Transport of cytokinins mediated by purine transporters of the PUP family expressed in phloem, hydathodes, and pollen of Arabidopsis.2003 · DOI: 10.1046/j.1365-313x.2003.01700.x
`At1g28230`	Proton-coupled purine transporter mediating adenine and trans-zeatin uptake.	Transport of cytokinins mediated by purine transporters of the PUP family expressed in phloem, hydathodes, and pollen of Arabidopsis.2003 · DOI: 10.1046/j.1365-313x.2003.01700.x Recycling of pyridoxine (vitamin B6) by PUP1 in Arabidopsis.2013 · DOI: 10.1111/tpj.12195
`At2g33750`	Mediates adenine transport.	Transport of cytokinins mediated by purine transporters of the PUP family expressed in phloem, hydathodes, and pollen of Arabidopsis.2003 · DOI: 10.1046/j.1365-313x.2003.01700.x
`At1g30840`	Probable purine permease 4.	No verified direct reference in this release
`At4g18220`	Purine permease 21.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_031139 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006863 purine nucleobase transport Biological Process

GO:0010184 cytokinin transport Biological Process

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0016020 membrane Cellular Component

GO:0005345 purine nucleobase transmembrane transporter activity Molecular Function

GO:0015211 purine nucleoside transmembrane transporter activity Molecular Function

GO:0022857 transmembrane transporter activity Molecular Function

KEGG gene cross-reference

ath:AT1G28220

ath:AT1G28230

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.690

Rank 1 · LXL04_031139 · OH-1004

Endoplasmic reticulum0.167

Rank 2 · LXL04_031139 · OH-1004

Lysosome / Vacuole0.089

Rank 3 · LXL04_031139 · OH-1004

Cytoplasm0.076

Rank 4 · LXL04_031139 · OH-1004

Nucleus0.044

Rank 5 · LXL04_031139 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF16913.12PUNUT25-187 aa

PF00892.27EamA59-174 aa

PF16913.12PUNUT191-287 aa

PF16913.12PUNUT487-716 aa

PF08449.18UAA516-690 aa

PF00892.27EamA520-635 aa

PF04142.22Nuc_sug_transp565-712 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_031139	`PF16913.12`	PUNUT	25	187	6.8e-146	486.3
LXL04_031139	`PF00892.27`	EamA	59	174	2.3e-12	48.1
LXL04_031139	`PF16913.12`	PUNUT	191	287	6.8e-146	486.3
LXL04_031139	`PF16913.12`	PUNUT	487	716	6.8e-146	486.3
LXL04_031139	`PF08449.18`	UAA	516	690	8.7e-08	32.4
LXL04_031139	`PF00892.27`	EamA	520	635	2.3e-12	48.1
LXL04_031139	`PF04142.22`	Nuc_sug_transp	565	712	5.1e-09	36.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FZ95`	Arabidopsis thaliana	Purine permease 3	52.301%	Swiss-Prot	weak database homology
`Q9FZ96`	Arabidopsis thaliana	Purine permease 1	58.079%	Swiss-Prot	weak database homology
`Q94GB1`	Arabidopsis thaliana	Purine permease 2	39.831%	Swiss-Prot	weak database homology
`Q9SY29`	Arabidopsis thaliana	Probable purine permease 4	34.818%	Swiss-Prot	weak database homology
`O49726`	Arabidopsis thaliana	Purine permease 21	33.766%	Swiss-Prot	weak database homology

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