LXL04_029905 | RubberDandelionOmics

Gene overview

LXL04_029905

Reference: OH-1004 Chr: Chr06 Coordinates: 103171229-103173595 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1410 bp · LXL04_029905|LXL04_029905|OH1004|cDNA

ATGTCGACGGTAGCCCACAGCCGGAAAACATCAGGAACGACGTCTTCACTTGCAAAGCGACAGGCGTCGGACAATGTCGTCGGGAAATCAATGGCTTTACCGCCTCACATGGCCAAGAAACGCCCTGCTCTCGCTAACGTTACGAATCAGAGACCCGCCTCTCATAACGTCCCTCGAACAGGATCTAATTTGAAGGGATCTTCAATTGTCAACAACAATGGTGTCTCATATGGAAGTATCTTCTCATCTTCAACCCATAC...

CDS

Download CDS FASTA

1410 bp · LXL04_029905|LXL04_029905|OH1004|CDS

ATGTCGACGGTAGCCCACAGCCGGAAAACATCAGGAACGACGTCTTCACTTGCAAAGCGACAGGCGTCGGACAATGTCGTCGGGAAATCAATGGCTTTACCGCCTCACATGGCCAAGAAACGCCCTGCTCTCGCTAACGTTACGAATCAGAGACCCGCCTCTCATAACGTCCCTCGAACAGGATCTAATTTGAAGGGATCTTCAATTGTCAACAACAATGGTGTCTCATATGGAAGTATCTTCTCATCTTCAACCCATAC...

Protein

Download Protein FASTA

469 aa · LXL04_029905|LXL04_029905|OH1004|PROTEIN

MSTVAHSRKTSGTTSSLAKRQASDNVVGKSMALPPHMAKKRPALANVTNQRPASHNVPRTGSNLKGSSIVNNNGVSYGSIFSSSTHTKPTASSKSIPTARKDAIVPPVQSKMDVSPSKSDMDETMSTCESLNSPDVEYIDNNDIAAMESIERKTCSKLNISDHVETTGNVCKREILMEMGTNEKIVDLDVDFMDPQLCATMACDIYQHLRATEAKKRPSFDFMEKVQKDINPSMRAILIDWLVEVAEEYRLVPDTLYLTI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_029905`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_029905

Location Chr06:103171229-103173595 (+)

Description Similar to CYCA1-1: Cyclin-A1-1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g44110`	Cyclin-A1-1.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`UniProt: Q0INT0`	Cyclin-A1-3.	No verified direct reference in this release
`Os01g0233500`	Involved in the control of the cell cycle at the G2/M (mitosis) transition.	Molecular characterization of mitotic cyclins in rice plants.1999 · DOI: 10.1007/s004380051079 The cell cycle genes cycA1;1 and cdc2Os-3 are coordinately regulated by gibberellin in planta.2000 · DOI: 10.1007/s004250000295
`UniProt: Q0JPA4`	Cyclin-A1-2.	No verified direct reference in this release
`Os05g0237100`	Cyclin-A1-4.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_029905 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0000082 G1/S transition of mitotic cell cycle Biological Process

GO:0051301 cell division Biological Process

GO:0000307 cyclin-dependent protein kinase holoenzyme complex Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0016538 cyclin-dependent protein serine/threonine kinase regulator activity Molecular Function

KEGG gene cross-reference

ath:AT1G44110

dosa:Os01g0233100

dosa:Os01g0233500

dosa:Os05g0237100

osa:4324288

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.783

Rank 1 · LXL04_029905 · OH-1004

Cytoplasm0.311

Rank 2 · LXL04_029905 · OH-1004

Mitochondrion0.043

Rank 3 · LXL04_029905 · OH-1004

Cell membrane0.025

Rank 4 · LXL04_029905 · OH-1004

Endoplasmic reticulum0.013

Rank 5 · LXL04_029905 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00134.29Cyclin_N204-331 aa

PF02984.25Cyclin_C333-455 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_029905	`PF00134.29`	Cyclin_N	204	331	6.6e-49	165.6
LXL04_029905	`PF02984.25`	Cyclin_C	333	455	3.6e-37	127.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9C6Y3`	Arabidopsis thaliana	Cyclin-A1-1	58.542%	Swiss-Prot	strong database homology
`Q0INT0`	Oryza sativa subsp. japonica	Cyclin-A1-3	64.628%	Swiss-Prot	strong database homology
`Q7F830`	Oryza sativa subsp. japonica	Cyclin-A1-1	57.737%	Swiss-Prot	strong database homology
`Q0JPA4`	Oryza sativa subsp. japonica	Cyclin-A1-2	63.830%	Swiss-Prot	strong database homology
`Q0DJR9`	Oryza sativa subsp. japonica	Cyclin-A1-4	59.943%	Swiss-Prot	strong database homology

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