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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

LXL04_029708
Reference: OH-1004 Chr: Chr06 Coordinates: 97846390-97849918 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1053 bp · LXL04_029708|LXL04_029708|OH1004|cDNA

ATGAAGCCATGCCCTGAATTGGTACCATCACTTTGCAGAGCCCATTCCTTCAGATGCTGCCATACTTCATTCGCCTCCTTCATCGTCTTGGGAGCCCTTCTTCACAACCCTATCATCGCACCACAGGTTCTCACCATTGTCGTCTTCTCGATATCTCAGATGAACTTGCTTTCGTCACTGCCGTACTGCCATCTCCATCTCCATTCGGCTAACTTAGGGTATTCAGAATCTCATAACTTGCCAGCTAATGTTCCGGAAGG...

CDS

Download CDS FASTA

1053 bp · LXL04_029708|LXL04_029708|OH1004|CDS

ATGAAGCCATGCCCTGAATTGGTACCATCACTTTGCAGAGCCCATTCCTTCAGATGCTGCCATACTTCATTCGCCTCCTTCATCGTCTTGGGAGCCCTTCTTCACAACCCTATCATCGCACCACAGGTTCTCACCATTGTCGTCTTCTCGATATCTCAGATGAACTTGCTTTCGTCACTGCCGTACTGCCATCTCCATCTCCATTCGGCTAACTTAGGGTATTCAGAATCTCATAACTTGCCAGCTAATGTTCCGGAAGG...

Protein

Download Protein FASTA

350 aa · LXL04_029708|LXL04_029708|OH1004|PROTEIN

MKPCPELVPSLCRAHSFRCCHTSFASFIVLGALLHNPIIAPQVLTIVVFSISQMNLLSSLPYCHLHLHSANLGYSESHNLPANVPEGAYVQWEIELLGFEMQKDWTGMDFRAIMNDVEKTKGTKKKQHNPCVWEYFAADRDRLMWKKKDQVSGLFWQKHNGLYIKNFMAAVGCFWNFQFVSLWLQLIGFKWDCVWGWLLPILLLWLQPKKKQFFSSFWGYFWDIKKDKMQQGLFWFDWILLWDHCTNRWLFLFSWYGVIW...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDLXL04_029708
Source versionOH-1004 / GCA_047496595.1_OSU_TarKok_2.0
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDLXL04_029708
LocationChr06:97846390-97849918 (-)
DescriptionSimilar to PAS1: Peptidyl-prolyl cis-trans isomerase PASTICCINO1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g54010 PPIases accelerate the folding of proteins.
Very-long-chain fatty acids are involved in polar auxin transport and developmental patterning in Arabidopsis.2010 · DOI: 10.1105/tpc.109.071209
The PASTICCINO genes of Arabidopsis thaliana are involved in the control of cell division and differentiation.1998 · DOI: 10.1242/dev.125.5.909
Mutation in the Arabidopsis PASTICCINO1 gene, which encodes a new FK506-binding protein-like protein, has a dramatic effect on plant development.1998 · DOI: 10.1128/mcb.18.5.3034

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_029708 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)
GO:0006457 protein folding Biological Process
GO:0009734 auxin-activated signaling pathway Biological Process
GO:0009735 response to cytokinin Biological Process
GO:0009736 cytokinin-activated signaling pathway Biological Process
GO:0009793 embryo development ending in seed dormancy Biological Process
GO:0009826 unidimensional cell growth Biological Process
GO:0009880 embryonic pattern specification Biological Process
GO:0030010 establishment of cell polarity Biological Process
GO:0030154 cell differentiation Biological Process
GO:0042761 very long-chain fatty acid biosynthetic process Biological Process
GO:0048364 root development Biological Process
GO:0048527 lateral root development Biological Process
KEGG gene cross-reference
ath:AT3G54010
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.392
Rank 1 · LXL04_029708 · OH-1004
Nucleus0.307
Rank 2 · LXL04_029708 · OH-1004
Mitochondrion0.210
Rank 3 · LXL04_029708 · OH-1004
Endoplasmic reticulum0.139
Rank 4 · LXL04_029708 · OH-1004
Cell membrane0.113
Rank 5 · LXL04_029708 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q7DMA9Arabidopsis thalianaPeptidyl-prolyl cis-trans isomerase PASTICCINO135.556%Swiss-Protweak database homology

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