LXL04_029404 | RubberDandelionOmics

Gene overview

LXL04_029404

Reference: OH-1004 Chr: Chr06 Coordinates: 89237087-89238619 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

384 bp · LXL04_029404|LXL04_029404|OH1004|cDNA

ATGGGGAGGTCGCCGACGACGAAAGATGATGCACAGGCTCTTTTTCAGTCTCTCCGATCTGCTTATGCTGCTACTCCTACTAATCTCAAGGTTCCCATTTTCTCCATCGATCTAATTAACATCATAGATCTGTACGTGGTTTTTGCTGTGTTCACCGCTGTAATTCAGGTGGTTTACATGGCAGTAGTTGGGTCGTTTCCATTCAACTCTTTTCTCTCTGGTGTGCTTTCTTGTGTAGGAACAGCTGTCTTAGCTGTTTG...

CDS

Download CDS FASTA

384 bp · LXL04_029404|LXL04_029404|OH1004|CDS

ATGGGGAGGTCGCCGACGACGAAAGATGATGCACAGGCTCTTTTTCAGTCTCTCCGATCTGCTTATGCTGCTACTCCTACTAATCTCAAGGTTCCCATTTTCTCCATCGATCTAATTAACATCATAGATCTGTACGTGGTTTTTGCTGTGTTCACCGCTGTAATTCAGGTGGTTTACATGGCAGTAGTTGGGTCGTTTCCATTCAACTCTTTTCTCTCTGGTGTGCTTTCTTGTGTAGGAACAGCTGTCTTAGCTGTTTG...

Protein

Download Protein FASTA

127 aa · LXL04_029404|LXL04_029404|OH1004|PROTEIN

MGRSPTTKDDAQALFQSLRSAYAATPTNLKVPIFSIDLINIIDLYVVFAVFTAVIQVVYMAVVGSFPFNSFLSGVLSCVGTAVLAVCLRIQVNKENKEFKDLPPERAFADFVLCNLVLHLVIMNFLG

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_029404`
TK1151 ID	TkA07G310460
OH-1004 ID	LXL04_029404
Relationship / confidence	Multi Candidate From Tk1151 / Complex relationship
Protein identity (%)	92.100
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_029404

Location Chr06:89237087-89238619 (-)

Description Similar to DAD1: Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g32210`	Subunit of the oligosaccharyl transferase (OST) complex that catalyzes the initial transfer of a defined glycan (Glc(3)Man(9)GlcNAc(2) in eukaryotes) from the lipid carrier dolichol-pyrophosphate to an asparagine residue within an Asn-X-Ser/Thr consensus motif in nascent polypeptide chains, the first step in protein N-glycosylation.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_029404 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006487 protein N-linked glycosylation Biological Process

GO:0005634 nucleus Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

GO:0008250 oligosaccharyltransferase complex Cellular Component

GO:0016020 membrane Cellular Component

KEGG gene cross-reference

ath:AT1G32210

sly:543753

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.667

Rank 1 · LXL04_029404 · OH-1004

Golgi apparatus0.216

Rank 2 · LXL04_029404 · OH-1004

Nucleus0.119

Rank 3 · LXL04_029404 · OH-1004

Cytoplasm0.117

Rank 4 · LXL04_029404 · OH-1004

Cell membrane0.083

Rank 5 · LXL04_029404 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02109.22DAD39-127 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_029404	`PF02109.22`	DAD	39	127	1.3e-36	125.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q39080`	Arabidopsis thaliana	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1	82.787%	Swiss-Prot	strong database homology

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