LXL04_028640 | RubberDandelionOmics

Gene overview

LXL04_028640

Reference: OH-1004 Chr: Chr06 Coordinates: 50872103-50873224 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

852 bp · LXL04_028640|LXL04_028640|OH1004|cDNA

ATGGCAGTAACCATGGTAGACCGTCTTGGTTTCAGACCCCCTTCCACCTCTACGGCCACCGTCCTCCGCTCAATCCCCCCTCATTTCCTGTCTTCCTCCGCCCGCACAGCTCTGCTGATGCTGCCGACACGCCTAGGTCCGTTTGCTACCTTCTCCAATTCCGGCTCTTGGTTTTCTCTTTCTTGCGACCTGCAATCTACTAAAGCTTTTGCAGTTCCAAGGAGAAGTTTGATGTCGTTAATTCTTTCCAGTACCATATT...

CDS

Download CDS FASTA

852 bp · LXL04_028640|LXL04_028640|OH1004|CDS

ATGGCAGTAACCATGGTAGACCGTCTTGGTTTCAGACCCCCTTCCACCTCTACGGCCACCGTCCTCCGCTCAATCCCCCCTCATTTCCTGTCTTCCTCCGCCCGCACAGCTCTGCTGATGCTGCCGACACGCCTAGGTCCGTTTGCTACCTTCTCCAATTCCGGCTCTTGGTTTTCTCTTTCTTGCGACCTGCAATCTACTAAAGCTTTTGCAGTTCCAAGGAGAAGTTTGATGTCGTTAATTCTTTCCAGTACCATATT...

Protein

Download Protein FASTA

283 aa · LXL04_028640|LXL04_028640|OH1004|PROTEIN

MAVTMVDRLGFRPPSTSTATVLRSIPPHFLSSSARTALLMLPTRLGPFATFSNSGSWFSLSCDLQSTKAFAVPRRSLMSLILSSTIFSQTETNLAFAQPSVEFREYIDTFDGYSFDYPKNWIQVRGANADIFFRDPFVLDENLSVEVSSPSSSKYKSVEDLGPPEAAGKAVLRQYLTEFMSTRLGVKRESSILSTSSRIAEDGKMYYQIEVNIKSFASNNELAVMPEDRVVRLEWDRRYLSVLGVENNQLYELRLQVPEN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_028640`
TK1151 ID	TkA07G178650
OH-1004 ID	LXL04_028640
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.300
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_028640

Location Chr06:50872103-50873224 (+)

Description Similar to PPD1: PsbP domain-containing protein 1, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g15510`	Photosystem I assembly factor that assists the proper folding and integration of PsaB and PsaA into the thylakoid membrane.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_028640 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0015979 photosynthesis Biological Process

GO:0048564 photosystem I assembly Biological Process

GO:0009507 chloroplast Cellular Component

GO:0009535 chloroplast thylakoid membrane Cellular Component

GO:0009543 chloroplast thylakoid lumen Cellular Component

GO:0009570 chloroplast stroma Cellular Component

GO:0009579 thylakoid Cellular Component

GO:0009654 photosystem II oxygen evolving complex Cellular Component

GO:0019898 extrinsic component of membrane Cellular Component

GO:0031977 thylakoid lumen Cellular Component

GO:0005509 calcium ion binding Molecular Function

KEGG gene cross-reference

ath:AT4G15510

syn:sll1418

tel:tlr2075

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.978

Rank 1 · LXL04_028640 · OH-1004

Mitochondrion0.030

Rank 2 · LXL04_028640 · OH-1004

Nucleus0.020

Rank 3 · LXL04_028640 · OH-1004

Cytoplasm0.016

Rank 4 · LXL04_028640 · OH-1004

Cell membrane0.010

Rank 5 · LXL04_028640 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01789.23PsbP102-278 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_028640	`PF01789.23`	PsbP	102	278	3e-38	132.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O23403`	Arabidopsis thaliana	PsbP domain-containing protein 1, chloroplastic	69.778%	Swiss-Prot	strong database homology

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