LXL04_026776 | RubberDandelionOmics

Gene overview

LXL04_026776

Reference: OH-1004 Chr: Chr06 Coordinates: 2764709-2772604 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2847 bp · LXL04_026776|LXL04_026776|OH1004|cDNA

ATGGTGGCATTTGGGAAAAAGTTGAAGGAATTGCAGATCCAGGAATGGAAAGGATATTACATTGATTACAAGTTACTCAAGAAGAAAGTAAAGCAATACGCTCAACAAAAGGACGATGTAGTCCACGATCGCGATTACGTTCTACGCGATTTCTCCAAATTGCTCGATGAACAGATTGAGAAGGTAGTTCTGTTCTTACTGAAACGACAAGGTCAACTTGCGACTAGGTTATCAGGTCTTGCTGACAATGGCGACGAGAG...

CDS

Download CDS FASTA

2847 bp · LXL04_026776|LXL04_026776|OH1004|CDS

ATGGTGGCATTTGGGAAAAAGTTGAAGGAATTGCAGATCCAGGAATGGAAAGGATATTACATTGATTACAAGTTACTCAAGAAGAAAGTAAAGCAATACGCTCAACAAAAGGACGATGTAGTCCACGATCGCGATTACGTTCTACGCGATTTCTCCAAATTGCTCGATGAACAGATTGAGAAGGTAGTTCTGTTCTTACTGAAACGACAAGGTCAACTTGCGACTAGGTTATCAGGTCTTGCTGACAATGGCGACGAGAG...

Protein

Download Protein FASTA

948 aa · LXL04_026776|LXL04_026776|OH1004|PROTEIN

MVAFGKKLKELQIQEWKGYYIDYKLLKKKVKQYAQQKDDVVHDRDYVLRDFSKLLDEQIEKVVLFLLKRQGQLATRLSGLADNGDESLSHGRDHDSIVELREGYREVGRDLLRLLFFVEMNAIGLRKILKKFDKRFGYKFTNYYVKTRANHPYSQLRQVFKHVGISAVIGSISRNIADLKDDQTHYASIYDHPTLHISDPIIESIKSAENRLLNSTDFLHYLGKHAFIVQDNEFPFPQTSPQENNMNERYHFMSLVLNLV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_026776`
TK1151 ID	TkA07G006880
OH-1004 ID	LXL04_026776
Relationship / confidence	Rbh Sequence Supported / Probable
Protein identity (%)	99.600
Protein coverage (%)	TK1151 95.714 / OH-1004 70.675 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_026776

Location Chr06:2764709-2772604 (+)

Description Similar to At4g22990: SPX domain-containing membrane protein At4g22990

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g22990`	SPX domain-containing membrane protein At4g22990.	No verified direct reference in this release
`At4g11810`	SPX domain-containing membrane protein At4g11810.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os04g0573000`	SPX domain-containing membrane protein Os04g0573000.	No verified direct reference in this release
`UniProt: B8AT51`	SPX domain-containing membrane protein OsI_17046.	No verified direct reference in this release
`Os02g0678200`	SPX domain-containing membrane protein Os02g45520.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_026776 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006817 phosphate ion transport Biological Process

GO:1905011 transmembrane phosphate ion transport from cytosol to vacuole Biological Process

GO:0009705 plant-type vacuole membrane Cellular Component

GO:0016020 membrane Cellular Component

GO:0005315 phosphate transmembrane transporter activity Molecular Function

GO:0022857 transmembrane transporter activity Molecular Function

KEGG gene cross-reference

ath:AT4G11810

ath:AT4G22990

dosa:Os02g0678200

dosa:Os04g0573000

osa:4336724

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.279

Rank 1 · LXL04_026776 · OH-1004

Lysosome / Vacuole0.241

Rank 2 · LXL04_026776 · OH-1004

Endoplasmic reticulum0.216

Rank 3 · LXL04_026776 · OH-1004

Golgi apparatus0.195

Rank 4 · LXL04_026776 · OH-1004

Cytoplasm0.179

Rank 5 · LXL04_026776 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03105.25SPX4-37 aa

PF03105.25SPX109-147 aa

PF07690.22MFS_1260-633 aa

PF00083.31Sugar_tr266-426 aa

PF00520.38Ion_trans695-749 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_026776	`PF03105.25`	SPX	4	37	7.4e-11	43.4
LXL04_026776	`PF03105.25`	SPX	109	147	7.4e-11	43.4
LXL04_026776	`PF07690.22`	MFS_1	260	633	9e-19	68.3
LXL04_026776	`PF00083.31`	Sugar_tr	266	426	1.1e-06	28.5
LXL04_026776	`PF00520.38`	Ion_trans	695	749	5.4e-06	26.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q93ZQ5`	Arabidopsis thaliana	SPX domain-containing membrane protein At4g22990	67.359%	Swiss-Prot	strong database homology
`Q9T050`	Arabidopsis thaliana	SPX domain-containing membrane protein At4g11810	65.639%	Swiss-Prot	strong database homology
`Q0JAW2`	Oryza sativa subsp. japonica	SPX domain-containing membrane protein Os04g0573000	64.785%	Swiss-Prot	strong database homology
`B8AT51`	Oryza sativa subsp. indica	SPX domain-containing membrane protein OsI_17046	64.785%	Swiss-Prot	strong database homology
`Q6EPQ3`	Oryza sativa subsp. japonica	SPX domain-containing membrane protein Os02g45520	63.343%	Swiss-Prot	strong database homology

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