LXL04_026665 | RubberDandelionOmics

Gene overview

LXL04_026665

Reference: OH-1004 Chr: Chr06 Coordinates: 1097264-1098977 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1056 bp · LXL04_026665|LXL04_026665|OH1004|cDNA

ATGGGCCACTGTGAAGAGATAAAGACTTGTAAGCCAGAAAAACCATCTTCACCACCACCTCAGGAGCATCAGCAGACCGGTGTTCACGCATACCCCGATTGGGCCGCCATGCAGGCTTATTATGGTCCTAGAATGCCTGTACCCCCATATTTCAACTCATCTGTTGCATCCGGTCATCCTCCTCCACCTTACATGTGGGCACCACCACAGCATATGATGCCACCTTATGCTGCAATGTATCCACATGGCGGTGTTTATCC...

CDS

Download CDS FASTA

1056 bp · LXL04_026665|LXL04_026665|OH1004|CDS

ATGGGCCACTGTGAAGAGATAAAGACTTGTAAGCCAGAAAAACCATCTTCACCACCACCTCAGGAGCATCAGCAGACCGGTGTTCACGCATACCCCGATTGGGCCGCCATGCAGGCTTATTATGGTCCTAGAATGCCTGTACCCCCATATTTCAACTCATCTGTTGCATCCGGTCATCCTCCTCCACCTTACATGTGGGCACCACCACAGCATATGATGCCACCTTATGCTGCAATGTATCCACATGGCGGTGTTTATCC...

Protein

Download Protein FASTA

351 aa · LXL04_026665|LXL04_026665|OH1004|PROTEIN

MGHCEEIKTCKPEKPSSPPPQEHQQTGVHAYPDWAAMQAYYGPRMPVPPYFNSSVASGHPPPPYMWAPPQHMMPPYAAMYPHGGVYPHPGVHLASPMSIDSPAKSSGNSERGLMKKLKGFDGLAMSIGNGISHSGETEGSSEGSDGNTASGKRTIPPGKVSKTEPVSGNFFSNEASKKATALTVVTPPNPNSDSEIKKSPSMMPNEALLQNERELKRERRKQSNRESARRSRLRKQAEAEELAIKVDALTTENLTLKTEI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_026665`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_026665

Location Chr06:1097264-1098977 (+)

Description Similar to CPRF1: Common plant regulatory factor 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g46270`	Binds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter.	No verified direct reference in this release
`At4g01120`	Binds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter.	No verified direct reference in this release
`At4g36730`	Binds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_026665 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0009637 response to blue light Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0019760 glucosinolate metabolic process Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005829 cytosol Cellular Component

GO:0000976 transcription cis-regulatory region binding Molecular Function

GO:0003677 DNA binding Molecular Function

GO:0003700 DNA-binding transcription factor activity Molecular Function

GO:0043565 sequence-specific DNA binding Molecular Function

KEGG gene cross-reference

ath:AT2G46270

ath:AT4G01120

ath:AT4G36730

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.977

Rank 1 · LXL04_026665 · OH-1004

Cytoplasm0.089

Rank 2 · LXL04_026665 · OH-1004

Cell membrane0.026

Rank 3 · LXL04_026665 · OH-1004

Endoplasmic reticulum0.011

Rank 4 · LXL04_026665 · OH-1004

Mitochondrion0.006

Rank 5 · LXL04_026665 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07777.17MFMR1-91 aa

PF00170.27bZIP_1212-274 aa

PF07716.21bZIP_2214-264 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_026665	`PF07777.17`	MFMR	1	91	4e-28	98.5
LXL04_026665	`PF00170.27`	bZIP_1	212	274	8.2e-21	74.6
LXL04_026665	`PF07716.21`	bZIP_2	214	264	5.4e-09	36.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`P42776`	Arabidopsis thaliana	G-box-binding factor 3	47.757%	Swiss-Prot	moderate database homology
`P42775`	Arabidopsis thaliana	G-box-binding factor 2	42.330%	Swiss-Prot	moderate database homology
`P42774`	Arabidopsis thaliana	G-box-binding factor 1	37.742%	Swiss-Prot	moderate database homology

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