LXL04_026252 | RubberDandelionOmics

Gene overview

LXL04_026252

Reference: OH-1004 Chr: Chr05 Coordinates: 123869411-123872794 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1470 bp · LXL04_026252|LXL04_026252|OH1004|cDNA

ATGCCCTCACATAATGGGCACATTATTTGCTTGACAGCTGAAATCGAAAGGAAGTTAAATGAAGCAACCATCCCCTTCCATCCTCATTCTTCTTCATCTCTTTCCTGCTCTTGTTTTAATCCCATTACTACAAATTTACCATCAATGGCAGCCATTCAGAACACCCACATTTCCACCTCCTCAAAGAAGAGAATGACTCCCGGTGACTTTACCAGGGACGACGATATCATCACCAAAAAAACATTTGAAGACCCTGCATC...

CDS

Download CDS FASTA

1470 bp · LXL04_026252|LXL04_026252|OH1004|CDS

ATGCCCTCACATAATGGGCACATTATTTGCTTGACAGCTGAAATCGAAAGGAAGTTAAATGAAGCAACCATCCCCTTCCATCCTCATTCTTCTTCATCTCTTTCCTGCTCTTGTTTTAATCCCATTACTACAAATTTACCATCAATGGCAGCCATTCAGAACACCCACATTTCCACCTCCTCAAAGAAGAGAATGACTCCCGGTGACTTTACCAGGGACGACGATATCATCACCAAAAAAACATTTGAAGACCCTGCATC...

Protein

Download Protein FASTA

489 aa · LXL04_026252|LXL04_026252|OH1004|PROTEIN

MPSHNGHIICLTAEIERKLNEATIPFHPHSSSSLSCSCFNPITTNLPSMAAIQNTHISTSSKKRMTPGDFTRDDDIITKKTFEDPASALANARHEFGEHGGVNMSIEASATFTVMEPETLSRMFTGELGPDRDFFIYSRHFNPTVLALGRQMAAMEGTEAAYCTSSGMAAISSVLLQLVSSGEHIVASPTLYGGTHAFLTHFLPKSSNIKTTFVDIRDLKKVEEAIVEGHTKVFFFESISNPTLTVANIPELSRIAHEKG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_026252`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_026252

Location Chr05:123869411-123872794 (-)

Description Similar to MGL: Methionine gamma-lyase

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g64660`	Catalyzes the degradation of L-methionine to alpha- ketobutyrate, methanethiol and ammonia.	Functional characterization of a methionine gamma-lyase in Arabidopsis and its implication in an alternative to the reverse trans-sulfuration pathway.2007 · DOI: 10.1093/pcp/pcl055

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_026252 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009086 methionine biosynthetic process Biological Process

GO:0009970 cellular response to sulfate starvation Biological Process

GO:0019346 transsulfuration Biological Process

GO:0019458 L-methionine catabolic process via 2-oxobutanoate Biological Process

GO:0042631 cellular response to water deprivation Biological Process

GO:0046677 response to antibiotic Biological Process

GO:0051289 protein homotetramerization Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0005829 cytosol Cellular Component

GO:0016846 carbon-sulfur lyase activity Molecular Function

GO:0018826 methionine gamma-lyase activity Molecular Function

GO:0030170 pyridoxal phosphate binding Molecular Function

KEGG gene cross-reference

ath:AT1G64660

fnu:FN1419

fpol:ERS445057_02025

pgi:PG_0343

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.620

Rank 1 · LXL04_026252 · OH-1004

Mitochondrion0.291

Rank 2 · LXL04_026252 · OH-1004

Cytoplasm0.153

Rank 3 · LXL04_026252 · OH-1004

Nucleus0.076

Rank 4 · LXL04_026252 · OH-1004

Peroxisome0.058

Rank 5 · LXL04_026252 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01053.27Cys_Met_Meta_PP97-464 aa

PF00155.28Aminotran_1_2155-336 aa

PF00266.26Aminotran_5167-332 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_026252	`PF01053.27`	Cys_Met_Meta_PP	97	464	8.6e-84	282.0
LXL04_026252	`PF00155.28`	Aminotran_1_2	155	336	1e-10	42.1
LXL04_026252	`PF00266.26`	Aminotran_5	167	332	2.4e-08	34.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9SGU9`	Arabidopsis thaliana	Methionine gamma-lyase	71.495%	Swiss-Prot	strong database homology

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