LXL04_023724 | RubberDandelionOmics

Gene overview

LXL04_023724

Reference: OH-1004 Chr: Chr05 Coordinates: 65395388-65397205 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1263 bp · LXL04_023724|LXL04_023724|OH1004|cDNA

ATGTCTTGTGTCTGTGATTTCTGTAATCAGAGATCGGCGGTGTTGTACTGTAAAGCCGATTCGGCTAAGCTCTGTTTGTTCTGTGATAACGCCGTCCACTCTGCTAATGCTTTATCTCTCAAACACTTCCGTTCTCAGATCTGTGACAACTGCGGATCTGATGCCGTTTCCGTCGCCTGTTCAACCGACAATCTTCTCCTCTGCACCTCCTGCGATCACGATTTTCATGGAGACTCCTCCGTTTCCTCTTACCACAATCG...

CDS

Download CDS FASTA

1263 bp · LXL04_023724|LXL04_023724|OH1004|CDS

ATGTCTTGTGTCTGTGATTTCTGTAATCAGAGATCGGCGGTGTTGTACTGTAAAGCCGATTCGGCTAAGCTCTGTTTGTTCTGTGATAACGCCGTCCACTCTGCTAATGCTTTATCTCTCAAACACTTCCGTTCTCAGATCTGTGACAACTGCGGATCTGATGCCGTTTCCGTCGCCTGTTCAACCGACAATCTTCTCCTCTGCACCTCCTGCGATCACGATTTTCATGGAGACTCCTCCGTTTCCTCTTACCACAATCG...

Protein

Download Protein FASTA

420 aa · LXL04_023724|LXL04_023724|OH1004|PROTEIN

MSCVCDFCNQRSAVLYCKADSAKLCLFCDNAVHSANALSLKHFRSQICDNCGSDAVSVACSTDNLLLCTSCDHDFHGDSSVSSYHNRVPVEEFSGCPSAFQLASIWGFNLKPSGSNGNSCESKYSTSNFHDLATIDEKNPCYDEVPSVDWKSRGSGCGVHNKVLYKQLVELAKEKFDGDGAEMGPQTPNGCGGREVSEGFEYEEQDEKDPLHQQTPLTYLLMPHQNPTNSKPKNGGIAEFNNMWSYSPKRETSQIWDFNL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_023724`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_023724

Location Chr05:65395388-65397205 (+)

Description Similar to COL15: Zinc finger protein CONSTANS-LIKE 15

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g28050`	Zinc finger protein CONSTANS-LIKE 15.	No verified direct reference in this release
`At2g33500`	Zinc finger protein CONSTANS-LIKE 14.	No verified direct reference in this release
`At2g47890`	Zinc finger protein CONSTANS-LIKE 13.	No verified direct reference in this release
`At5g48250`	Zinc finger protein CONSTANS-LIKE 10.	No verified direct reference in this release
`At3g07650`	Zinc finger protein CONSTANS-LIKE 9.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_023724 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0007623 circadian rhythm Biological Process

GO:0009416 response to light stimulus Biological Process

GO:0009637 response to blue light Biological Process

GO:0010114 response to red light Biological Process

GO:0010218 response to far red light Biological Process

GO:0005634 nucleus Cellular Component

GO:0000976 transcription cis-regulatory region binding Molecular Function

GO:0003677 DNA binding Molecular Function

GO:0003700 DNA-binding transcription factor activity Molecular Function

GO:0008270 zinc ion binding Molecular Function

KEGG gene cross-reference

ath:AT1G28050

ath:AT2G33500

ath:AT2G47890

ath:AT5G48250

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.782

Rank 1 · LXL04_023724 · OH-1004

Cytoplasm0.239

Rank 2 · LXL04_023724 · OH-1004

Cell membrane0.064

Rank 3 · LXL04_023724 · OH-1004

Endoplasmic reticulum0.036

Rank 4 · LXL04_023724 · OH-1004

Golgi apparatus0.022

Rank 5 · LXL04_023724 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00643.30zf-B_box4-42 aa

PF00643.30zf-B_box45-90 aa

PF06203.20CCT376-417 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_023724	`PF00643.30`	zf-B_box	4	42	9.9e-10	39.1
LXL04_023724	`PF00643.30`	zf-B_box	45	90	9.9e-10	39.1
LXL04_023724	`PF06203.20`	CCT	376	417	1.3e-15	57.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9C7E8`	Arabidopsis thaliana	Zinc finger protein CONSTANS-LIKE 15	37.862%	Swiss-Prot	moderate database homology
`O22800`	Arabidopsis thaliana	Zinc finger protein CONSTANS-LIKE 14	39.080%	Swiss-Prot	moderate database homology
`O82256`	Arabidopsis thaliana	Zinc finger protein CONSTANS-LIKE 13	35.391%	Swiss-Prot	moderate database homology
`Q9LUA9`	Arabidopsis thaliana	Zinc finger protein CONSTANS-LIKE 10	41.135%	Swiss-Prot	weak database homology
`Q9SSE5`	Arabidopsis thaliana	Zinc finger protein CONSTANS-LIKE 9	37.415%	Swiss-Prot	weak database homology

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