LXL04_022197 | RubberDandelionOmics

Gene overview

LXL04_022197

Reference: OH-1004 Chr: Chr04 Coordinates: 145971944-145973417 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

717 bp · LXL04_022197|LXL04_022197|OH1004|cDNA

ATGGCAGATAAGGTTGCAGACGCGATGTTGACCGCCGCTGATAAAGCTCCGGTGACCTCCGACAGAAAGATTCGGTCAGACCTCGACAACAAGCTCCCTAAGCCATatatggcacGAGCGGTGACTGCCCCTGATACTGATAATCCGAATGGAACATTCGGACATAAACATCATAGTATGTCGGTTCTTCAGCAACACGTGGCATTCTTTGACCAGGATAACAACGGGATCATCTTCCCATGGGAGACTTTTAAAGGGTG...

CDS

Download CDS FASTA

717 bp · LXL04_022197|LXL04_022197|OH1004|CDS

ATGGCAGATAAGGTTGCAGACGCGATGTTGACCGCCGCTGATAAAGCTCCGGTGACCTCCGACAGAAAGATTCGGTCAGACCTCGACAACAAGCTCCCTAAGCCATATATGGCACGAGCGGTGACTGCCCCTGATACTGATAATCCGAATGGAACATTCGGACATAAACATCATAGTATGTCGGTTCTTCAGCAACACGTGGCATTCTTTGACCAGGATAACAACGGGATCATCTTCCCATGGGAGACTTTTAAAGGGTG...

Protein

Download Protein FASTA

238 aa · LXL04_022197|LXL04_022197|OH1004|PROTEIN

MADKVADAMLTAADKAPVTSDRKIRSDLDNKLPKPYMARAVTAPDTDNPNGTFGHKHHSMSVLQQHVAFFDQDNNGIIFPWETFKGCRDIGFNPVASFFVMVYAHLAMSYVTLPTWLPSPFFPIYIENIHKAKHGSDSATYDTEGRFIPSNLENIFSKYGRTVPDKLTFKELWHMTDATRNAFDFFGWIAGKFEWLALYLLAKDSEGFLSKESVRRCFDGSLFEYCAKMQRGDAGKKD

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_022197`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_022197

Location Chr04:145971944-145973417 (+)

Description Similar to PXG3: Probable peroxygenase 3

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g33380`	Probable calcium-binding peroxygenase.	RD20, a stress-inducible caleosin, participates in stomatal control, transpiration and drought tolerance in Arabidopsis thaliana.2010 · DOI: 10.1093/pcp/pcq155
`At4g26740`	Calcium-binding peroxygenase involved in the degradation of storage lipid in oil bodies.	No verified direct reference in this release
`At5g55240`	Calcium-binding peroxygenase involved in the degradation of storage lipid in oil bodies.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os04g0511200`	Calcium-binding peroxygenase involved in the degradation of storage lipid in oil bodies.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_022197 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006952 defense response Biological Process

GO:0009269 response to desiccation Biological Process

GO:0009409 response to cold Biological Process

GO:0009620 response to fungus Biological Process

GO:0009651 response to salt stress Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0009751 response to salicylic acid Biological Process

GO:0009793 embryo development ending in seed dormancy Biological Process

GO:0010118 stomatal movement Biological Process

GO:0010431 seed maturation Biological Process

GO:0010888 negative regulation of lipid storage Biological Process

GO:0031407 oxylipin metabolic process Biological Process

KEGG gene cross-reference

ath:AT2G33380

ath:AT4G26740

ath:AT5G55240

dosa:Os04g0511200

sind:105171741

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.705

Rank 1 · LXL04_022197 · OH-1004

Mitochondrion0.158

Rank 2 · LXL04_022197 · OH-1004

Cytoplasm0.133

Rank 3 · LXL04_022197 · OH-1004

Cell membrane0.092

Rank 4 · LXL04_022197 · OH-1004

Nucleus0.089

Rank 5 · LXL04_022197 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF05042.20Caleosin59-226 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_022197	`PF05042.20`	Caleosin	59	226	1.9e-76	256.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O22788`	Arabidopsis thaliana	Probable peroxygenase 3	64.378%	Swiss-Prot	strong database homology
`O81270`	Arabidopsis thaliana	Peroxygenase 1	65.929%	Swiss-Prot	strong database homology
`Q9FLN9`	Arabidopsis thaliana	Peroxygenase 2	66.216%	Swiss-Prot	strong database homology
`Q7FAX1`	Oryza sativa subsp. japonica	Peroxygenase	59.556%	Swiss-Prot	strong database homology

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