Gene Card
Gene overview
cDNA / CDS / Protein Sequences
420 bp · LXL04_022153|LXL04_022153|OH1004|cDNA
ATGGCCACGTCGAAATTGGCAGCAGCCGCGGCTGAGAGGGTGGGAACGGCGACGAGACGGCAAGCCCTAACGCTTACAGAAGCGGCGGCGAGTAGGATACGCCACCTCCTCCAGCAGCGCCAACGCCCTTTCCTTAAACTCGGCGTCAAAGCTCGCGGGTGTAACGGCCTTTCATATACCCTAAATTACGCAGATGAAAAGGGGAAATTTGATGAGTTGATTGAGGAAAAGGGTGTGAAGATATTGATAGATCCAAAGGC...
420 bp · LXL04_022153|LXL04_022153|OH1004|CDS
ATGGCCACGTCGAAATTGGCAGCAGCCGCGGCTGAGAGGGTGGGAACGGCGACGAGACGGCAAGCCCTAACGCTTACAGAAGCGGCGGCGAGTAGGATACGCCACCTCCTCCAGCAGCGCCAACGCCCTTTCCTTAAACTCGGCGTCAAAGCTCGCGGGTGTAACGGCCTTTCATATACCCTAAATTACGCAGATGAAAAGGGGAAATTTGATGAGTTGATTGAGGAAAAGGGTGTGAAGATATTGATAGATCCAAAGGC...
Protein
Download Protein FASTA139 aa · LXL04_022153|LXL04_022153|OH1004|PROTEIN
MATSKLAAAAAERVGTATRRQALTLTEAAASRIRHLLQQRQRPFLKLGVKARGCNGLSYTLNYADEKGKFDELIEEKGVKILIDPKALMHVIGTKMDFVDDKLRSEFIFINPNSKGQCGCGESFMTTSSTEATKAGGTS
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_022153 |
|---|---|
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_022153 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr04:145415408-145416539 (-) | |||||||||
| Description | Similar to At2g16710: Iron-sulfur assembly protein IscA-like 1, mitochondrial | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0009102 biotin biosynthetic process Biological Process GO:0016226 iron-sulfur cluster assembly Biological Process GO:0044572 [4Fe-4S] cluster assembly Biological Process GO:0051604 protein maturation Biological Process GO:0071000 response to magnetism Biological Process GO:0005737 cytoplasm Cellular Component GO:0005739 mitochondrion Cellular Component GO:0005759 mitochondrial matrix Cellular Component GO:0120510 mitochondrial [4Fe-4S] assembly complex Cellular Component GO:0005506 iron ion binding Molecular Function GO:0046872 metal ion binding Molecular Function GO:0051536 iron-sulfur cluster binding Molecular Function | |||||||||
| KEGG gene cross-reference | ath:AT2G16710 ath:AT2G36260 dme:Dmel_CG8198 rpr:RP484 sce:YLL027W These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF01521.27Fe-S_biosyn23-122 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_022153 | PF01521.27 | Fe-S_biosyn | 23 | 122 | 2.8e-20 | 73.3 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.