Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1071 bp · LXL04_022058|LXL04_022058|OH1004|cDNA
ATGTCGATGTCGAAGGGGTCGAAGATGCTCCAGTTCATCAATTACCGTATGCGAATCACTATCCAAGACGGTCGCCAGTTAGTTGGCAAGTTCATGGCCTTCGACCGCCACATGAACCTTGTAATCGGAGATTGTGAAGAGTTCCGTAAGCTCCCCCCTGCTAAAGGTGCGAAGAAGAATGAAGAACGTGAAGACCGCCGCACTCTTGGCCTCGTTCTCCTTAGGGGAGAAGAGGTGATCTCAATGACCGTTGAAGGCCC...
1071 bp · LXL04_022058|LXL04_022058|OH1004|CDS
ATGTCGATGTCGAAGGGGTCGAAGATGCTCCAGTTCATCAATTACCGTATGCGAATCACTATCCAAGACGGTCGCCAGTTAGTTGGCAAGTTCATGGCCTTCGACCGCCACATGAACCTTGTAATCGGAGATTGTGAAGAGTTCCGTAAGCTCCCCCCTGCTAAAGGTGCGAAGAAGAATGAAGAACGTGAAGACCGCCGCACTCTTGGCCTCGTTCTCCTTAGGGGAGAAGAGGTGATCTCAATGACCGTTGAAGGCCC...
Protein
Download Protein FASTA356 aa · LXL04_022058|LXL04_022058|OH1004|PROTEIN
MSMSKGSKMLQFINYRMRITIQDGRQLVGKFMAFDRHMNLVIGDCEEFRKLPPAKGAKKNEEREDRRTLGLVLLRGEEVISMTVEGPPPPDENRAKAVGAAALAGPGLGRAAGRGIPTAPLIQAQPGLSGPVRGIGGPAPGMMQPQISRPPVPNMSAPPMNYPQAPVIRPGQMPYPGQGPPPQMPRGPPPQMPPQFAQRPPGQYPVPPPGQYGQRPMVPPPQMMRGPPPPGGAPRPGMPGPPPPARPGMPPPGGQMPGFG...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_022058 |
|---|---|
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_022058 |
|---|---|
| Location | Chr04:144096667-144099062 (-) |
| Description | Similar to SNRPN: Small nuclear ribonucleoprotein-associated protein N |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0000395 mRNA 5'-splice site recognition Biological Process GO:0000398 mRNA splicing, via spliceosome Biological Process GO:0007281 germ cell development Biological Process GO:0036261 7-methylguanosine cap hypermethylation Biological Process GO:0045292 mRNA cis splicing, via spliceosome Biological Process GO:0071045 nuclear histone mRNA catabolic process Biological Process GO:0005634 nucleus Cellular Component GO:0005681 spliceosomal complex Cellular Component GO:0005682 U5 snRNP Cellular Component GO:0005685 U1 snRNP Cellular Component GO:0005686 U2 snRNP Cellular Component GO:0005687 U4 snRNP Cellular Component |
| KEGG gene cross-reference | bta:780877 cel:CELE_W08E3.1 ddi:DDB_G0272320 dme:Dmel_CG5352 spo:2542684 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF01423.29LSM9-83 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_022058 | PF01423.29 | LSM | 9 | 83 | 1.1e-15 | 57.8 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.