LXL04_019078 | RubberDandelionOmics

Gene overview

LXL04_019078

Reference: OH-1004 Chr: Chr04 Coordinates: 23200132-23201594 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1095 bp · LXL04_019078|LXL04_019078|OH1004|cDNA

CCGAACTCTTCTCTCTACCGTTTTTCTCTCTCTTCCTCAAATCTCTTCCTGTTTCTCTCTCTAAAAGTTGGCGCCACCTTCCATGAACGCTCTTCATTCTTCACTTGTTACATCAGCGATGCCAAAGCTCTTTATACAATCGAAATTCAAGGACATGTACTCACACTGATCGATACCTATACATCGGAAGACAAACAAGATAACATGTGGCGGTCATCGTTTCCGTTGCTAAAACAGGGTGTAGCGTCGGCGAGTAATAG...

CDS

Download CDS FASTA

1047 bp · LXL04_019078|LXL04_019078|OH1004|CDS

CTGTTTCTCTCTCTAAAAGTTGGCGCCACCTTCCATGAACGCTCTTCATTCTTCACTTGTTACATCAGCGATGCCAAAGCTCTTTATACAATCGAAATTCAAGGACATGTACTCACACTGATCGATACCTATACATCGGAAGACAAACAAGATAACATGTGGCGGTCATCGTTTCCGTTGCTAAAACAGGGTGTAGCGTCGGCGAGTAATAGGTGTAAACCGGCATCGTTCGGACTGACAAGAACCGCTTTTGTCGAATC...

Protein

Download Protein FASTA

348 aa · LXL04_019078|LXL04_019078|OH1004|PROTEIN

MFLSLKVGATFHERSSFFTCYISDAKALYTIEIQGHVLTLIDTYTSEDKQDNMWRSSFPLLKQGVASASNRCKPASFGLTRTAFVESNNGICGCLFSSSVGGGAGVGTGGNVGDRASIEEANKLMGSVDVEALKTKLGTGGKEVVPYSELLQACESLGLAKSAEEAKQLAKVFDDTGVIFIFRDQAYLHPHKVIDMVRKAVPLALLPENDPSKEELKTLQAKQVEIDVLANKQVRRILWGGLGLSVAHTSLFFRLTFWEF...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_019078`
TK1151 ID	TkA05G016840
OH-1004 ID	LXL04_019078
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	98.600
Protein coverage (%)	TK1151 95.604 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_019078

Location Chr04:23200132-23201594 (+)

Description Similar to At1g57610: Calcium uniporter protein 5, mitochondrial

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g57610`	Mitochondrial inner membrane calcium uniporter that mediates calcium uptake into mitochondria (By similarity).	No verified direct reference in this release
`At1g09575`	Mitochondrial inner membrane calcium uniporter that mediates calcium uptake into mitochondria.	Physiological Characterization of a Plant Mitochondrial Calcium Uniporter in Vitro and in Vivo.2017 · DOI: 10.1104/pp.16.01359
`At5g66650`	Chloroplastic membrane calcium uniporter that mediates calcium uptake into chloroplast stroma.	No verified direct reference in this release
`At4g36820`	Mitochondrial inner membrane calcium uniporter that mediates calcium uptake into mitochondria (By similarity).	No verified direct reference in this release
`At2g23790`	Mitochondrial inner membrane calcium uniporter that mediates calcium uptake into mitochondria (By similarity).	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_019078 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0036444 calcium import into the mitochondrion Biological Process

GO:0051560 mitochondrial calcium ion homeostasis Biological Process

GO:0070509 calcium ion import Biological Process

GO:0071456 cellular response to hypoxia Biological Process

GO:0005739 mitochondrion Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009941 chloroplast envelope Cellular Component

GO:0031969 chloroplast membrane Cellular Component

GO:1990246 uniplex complex Cellular Component

GO:0005262 calcium channel activity Molecular Function

GO:0015292 uniporter activity Molecular Function

GO:0046872 metal ion binding Molecular Function

KEGG gene cross-reference

ath:AT1G09575

ath:AT1G57610

ath:AT2G23790

ath:AT4G36820

ath:AT5G66650

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.885

Rank 1 · LXL04_019078 · OH-1004

Nucleus0.057

Rank 2 · LXL04_019078 · OH-1004

Plastid0.057

Rank 3 · LXL04_019078 · OH-1004

Cytoplasm0.055

Rank 4 · LXL04_019078 · OH-1004

Cell membrane0.019

Rank 5 · LXL04_019078 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF04678.19MCU164-322 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_019078	`PF04678.19`	MCU	164	322	2.3e-49	168.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8VYR0`	Arabidopsis thaliana	Calcium uniporter protein 2, mitochondrial	60.909%	Swiss-Prot	moderate database homology
`F4I111`	Arabidopsis thaliana	Calcium uniporter protein 1, mitochondrial	57.778%	Swiss-Prot	moderate database homology
`Q9LVR5`	Arabidopsis thaliana	Chloroplastic calcium uniporter protein	37.668%	Swiss-Prot	moderate database homology
`Q1PE15`	Arabidopsis thaliana	Calcium uniporter protein 4, mitochondrial	38.462%	Swiss-Prot	moderate database homology
`O64823`	Arabidopsis thaliana	Calcium uniporter protein 3, mitochondrial	37.327%	Swiss-Prot	moderate database homology

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