LXL04_017588 | RubberDandelionOmics

Gene overview

LXL04_017588

Reference: OH-1004 Chr: Chr03 Coordinates: 154491713-154492366 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

654 bp · LXL04_017588|LXL04_017588|OH1004|cDNA

ATGGTCATGCGACGAGGCAGCAGAGCGAAGGCGGCCGACGGAGAACCGACCGGATCGAGACCGGAGGAGGTGGTGGCTAAGCAGCAGGAGACCAACGAGCCACGGTACCGCGGGGTTCGAAAGAGACCGTGGGGTCGTTTCGCCGCCGAGATCCGTGACCCATGGAAGAAAGCCCGTGTCTGGTTAGGCACTTTCGACTCCGCCGAAGACGCTGCACGGGCCTACGACGCCGCCGCGCGCTCCCTCCGTGGCCCCAAGGC...

CDS

Download CDS FASTA

654 bp · LXL04_017588|LXL04_017588|OH1004|CDS

ATGGTCATGCGACGAGGCAGCAGAGCGAAGGCGGCCGACGGAGAACCGACCGGATCGAGACCGGAGGAGGTGGTGGCTAAGCAGCAGGAGACCAACGAGCCACGGTACCGCGGGGTTCGAAAGAGACCGTGGGGTCGTTTCGCCGCCGAGATCCGTGACCCATGGAAGAAAGCCCGTGTCTGGTTAGGCACTTTCGACTCCGCCGAAGACGCTGCACGGGCCTACGACGCCGCCGCGCGCTCCCTCCGTGGCCCCAAGGC...

Protein

Download Protein FASTA

217 aa · LXL04_017588|LXL04_017588|OH1004|PROTEIN

MVMRRGSRAKAADGEPTGSRPEEVVAKQQETNEPRYRGVRKRPWGRFAAEIRDPWKKARVWLGTFDSAEDAARAYDAAARSLRGPKAKTNFPFLPSHEIQDRPADDQTKQLQQTIYQSRPTMSSLSSTVESTSGPRPSNPVTTHHRLKPPPVHQDDDDCHSNCDSSSSVVDDYYYDADLASSSRKPLPFDLNLPPPLDEIGFPSNPNDDLYVTALCL

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_017588`
TK1151 ID	TkA02G022560
OH-1004 ID	LXL04_017588
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	89.800
Protein coverage (%)	TK1151 100.000 / OH-1004 99.078 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_017588

Location Chr03:154491713-154492366 (+)

Description Similar to ERF3: Ethylene-responsive transcription factor 3

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g50640`	Acts as a transcriptional repressor.	Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression.2000 · DOI: 10.1105/tpc.12.3.393 Repression domains of class II ERF transcriptional repressors share an essential motif for active repression.2001 · DOI: 10.1105/tpc.010127
`At3g20310`	Involved in the regulation of gene expression by abscisic acid, stress factors and by components of stress signal transduction pathways.	Role of an Arabidopsis AP2/EREBP-type transcriptional repressor in abscisic acid and drought stress responses.2005 · DOI: 10.1105/tpc.105.033043
`At3g15210`	Acts as a transcriptional repressor.	Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression.2000 · DOI: 10.1105/tpc.12.3.393 Repression domains of class II ERF transcriptional repressors share an essential motif for active repression.2001 · DOI: 10.1105/tpc.010127

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_017588 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0006952 defense response Biological Process

GO:0009414 response to water deprivation Biological Process

GO:0009723 response to ethylene Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0009864 induced systemic resistance, jasmonic acid mediated signaling pathway Biological Process

GO:0009873 ethylene-activated signaling pathway Biological Process

GO:0010105 negative regulation of ethylene-activated signaling pathway Biological Process

GO:0010629 negative regulation of gene expression Biological Process

GO:0045892 negative regulation of DNA-templated transcription Biological Process

GO:0071456 cellular response to hypoxia Biological Process

KEGG gene cross-reference

ath:AT1G50640

ath:AT3G15210

ath:AT3G20310

nsy:104222902

nta:107802932

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.948

Rank 1 · LXL04_017588 · OH-1004

Cytoplasm0.098

Rank 2 · LXL04_017588 · OH-1004

Cell membrane0.038

Rank 3 · LXL04_017588 · OH-1004

Endoplasmic reticulum0.036

Rank 4 · LXL04_017588 · OH-1004

Plastid0.020

Rank 5 · LXL04_017588 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00847.27AP234-84 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_017588	`PF00847.27`	AP2	34	84	9.8e-15	55.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O80339`	Arabidopsis thaliana	Ethylene-responsive transcription factor 3	51.064%	Swiss-Prot	strong database homology
`Q9LDE4`	Arabidopsis thaliana	Ethylene-responsive transcription factor 7	42.126%	Swiss-Prot	moderate database homology
`O80340`	Arabidopsis thaliana	Ethylene-responsive transcription factor 4	70.000%	Swiss-Prot	weak database homology

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