Gene Card
Gene overview
cDNA / CDS / Protein Sequences
651 bp · LXL04_017184|LXL04_017184|OH1004|cDNA
ATGGTTCGTTCCATCCTCATGATTCTTGTCTTAGTCACATTAGCATCAATCACCGGGAATATCGTTGCAGAGGCACGTAACCTTTTGGAGGTGCCGAAGCCCACACTTCCCGACATACTAAAGCCCACTATTCCGGAGATACCTAAGCCCATAATTCCAGAATTTCCGAAGCCCACACTTCCAGAGATGCCAAAGCCGGTAATTCCCGAAATTCCAAAGCCCACACTTCCTGACATGCCAAAGCCCGTAATCCCGGAGGT...
651 bp · LXL04_017184|LXL04_017184|OH1004|CDS
ATGGTTCGTTCCATCCTCATGATTCTTGTCTTAGTCACATTAGCATCAATCACCGGGAATATCGTTGCAGAGGCACGTAACCTTTTGGAGGTGCCGAAGCCCACACTTCCCGACATACTAAAGCCCACTATTCCGGAGATACCTAAGCCCATAATTCCAGAATTTCCGAAGCCCACACTTCCAGAGATGCCAAAGCCGGTAATTCCCGAAATTCCAAAGCCCACACTTCCTGACATGCCAAAGCCCGTAATCCCGGAGGT...
Protein
Download Protein FASTA216 aa · LXL04_017184|LXL04_017184|OH1004|PROTEIN
MVRSILMILVLVTLASITGNIVAEARNLLEVPKPTLPDILKPTIPEIPKPIIPEFPKPTLPEMPKPVIPEIPKPTLPDMPKPVIPEVPKPTLPEIPKPVIPEISNPTLPEIAKPTLPEMPKPVIPDLPKPTLPEIPKPTLPEMPKPVIPEVSKPTLPEMPKPVVPEVPKPTLPDMPKPTLPEFPKPTIPEMPKPVVPEIPKPTLPKDFPIPSTPHP
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_017184 |
|---|---|
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_017184 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr03:142907743-142908393 (+) | |||||||||
| Description | Similar to PELPK1: Protein PELPK1 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0006955 immune response Biological Process GO:0009791 post-embryonic development Biological Process GO:0010030 positive regulation of seed germination Biological Process GO:0032715 negative regulation of interleukin-6 production Biological Process GO:0042127 regulation of cell population proliferation Biological Process GO:2000028 regulation of photoperiodism, flowering Biological Process GO:0005615 extracellular space Cellular Component GO:0009505 plant-type cell wall Cellular Component GO:0031012 extracellular matrix Cellular Component GO:0005044 scavenger receptor activity Molecular Function GO:0030247 polysaccharide binding Molecular Function | |||||||||
| KEGG gene cross-reference | ath:AT5G09530 mmu:96875 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF02389.21Cornifin32-129 aaPF02389.21Cornifin107-213 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_017184 | PF02389.21 | Cornifin | 32 | 129 | 6.4e-12 | 46.5 |
| LXL04_017184 | PF02389.21 | Cornifin | 107 | 213 | 6.4e-12 | 46.5 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.