Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1077 bp · LXL04_013455|LXL04_013455|OH1004|cDNA
ATGGAGAAGAAAAGAGTGGATGAGAGCGTGCAAGTGCCAGCTCCAGGAAGAGTAGACAGATTCGGATTTGCAAAACAGGAACATAACTCGCCTGATGGCATATCCAAAAGCAAGTCGGCATTAGAGTATCAGAGGGAACAGAAAAGACTTAGAAAATGGAGAAAGATGATTGGTGTTGGAGGTAGCGATTGGAAGCATTATGTAAGAAGGAAACCAAACGTGGTCAAACGACGTATACGGAAAGGAATCCCTGATTCTTT...
1077 bp · LXL04_013455|LXL04_013455|OH1004|CDS
ATGGAGAAGAAAAGAGTGGATGAGAGCGTGCAAGTGCCAGCTCCAGGAAGAGTAGACAGATTCGGATTTGCAAAACAGGAACATAACTCGCCTGATGGCATATCCAAAAGCAAGTCGGCATTAGAGTATCAGAGGGAACAGAAAAGACTTAGAAAATGGAGAAAGATGATTGGTGTTGGAGGTAGCGATTGGAAGCATTATGTAAGAAGGAAACCAAACGTGGTCAAACGACGTATACGGAAAGGAATCCCTGATTCTTT...
Protein
Download Protein FASTA358 aa · LXL04_013455|LXL04_013455|OH1004|PROTEIN
MEKKRVDESVQVPAPGRVDRFGFAKQEHNSPDGISKSKSALEYQREQKRLRKWRKMIGVGGSDWKHYVRRKPNVVKRRIRKGIPDSLRGLVWQLISGSRDLLLMNPGVYEQLVIYETSASELDIIRDIGRTFPSHVFYQQRHGPGQRSLYNVLKAYSVYDREVGYVQGMGYLAGLLLLYMSEEDAFWLVVALLKGAVHAPMEGLYLEGLPLVQQYLFQFDRLMREYMPKLGEHFTEEMINPSMYGSQWFITVFSYSFPFH...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_013455 |
|---|---|
| TK1151 ID | TkA02G495050 |
| OH-1004 ID | LXL04_013455 |
| Relationship / confidence | Rbh High Identity Coverage Synteny / Strict |
| Protein identity (%) | 100.000 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_013455 |
|---|---|
| Location | Chr03:29891627-29893454 (-) |
| Description | Similar to EVI5L: EVI5-like protein |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0006897 endocytosis Biological Process GO:0015031 protein transport Biological Process GO:0030334 regulation of cell migration Biological Process GO:0032880 regulation of protein localization Biological Process GO:0042147 retrograde transport, endosome to Golgi Biological Process GO:0043547 positive regulation of GTPase activity Biological Process GO:0051301 cell division Biological Process GO:1902018 negative regulation of cilium assembly Biological Process GO:0005634 nucleus Cellular Component GO:0005737 cytoplasm Cellular Component GO:0005768 endosome Cellular Component GO:0005769 early endosome Cellular Component |
| KEGG gene cross-reference | dme:Dmel_CG11727 gga:424438 hsa:115704 hsa:7813 mmu:227800 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF00566.26RabGAP-TBC85-292 aaPF23436.2RabGap-TBC_2147-305 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_013455 | PF00566.26 | RabGAP-TBC | 85 | 292 | 3.3e-60 | 204.1 |
| LXL04_013455 | PF23436.2 | RabGap-TBC_2 | 147 | 305 | 1.1e-44 | 153.4 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.