Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1269 bp · LXL04_012842|LXL04_012842|OH1004|cDNA
ATGGGAGGTGAAGCGGAGAAATGGGTGTTGATGGTGACAGCGAGAACGCCGACGAACATAGCCGTGATCAAGTACTGGGGGAAGAGAGACGAAACCTTGATATTGCCGATCAACGATAGCATCAGTGTTACTCTCGATCCAAATCACTTGTGTACCACCACCACCGTCTCCGTCAGCCCTAGCTTCGATCAAGATCGCATGTGGCTTAACGGCAAGGAAATATCTCTTCAAGGAGGCAGATTCCAGAGCTGTTTGAGAGA...
1269 bp · LXL04_012842|LXL04_012842|OH1004|CDS
ATGGGAGGTGAAGCGGAGAAATGGGTGTTGATGGTGACAGCGAGAACGCCGACGAACATAGCCGTGATCAAGTACTGGGGGAAGAGAGACGAAACCTTGATATTGCCGATCAACGATAGCATCAGTGTTACTCTCGATCCAAATCACTTGTGTACCACCACCACCGTCTCCGTCAGCCCTAGCTTCGATCAAGATCGCATGTGGCTTAACGGCAAGGAAATATCTCTTCAAGGAGGCAGATTCCAGAGCTGTTTGAGAGA...
Protein
Download Protein FASTA422 aa · LXL04_012842|LXL04_012842|OH1004|PROTEIN
MGGEAEKWVLMVTARTPTNIAVIKYWGKRDETLILPINDSISVTLDPNHLCTTTTVSVSPSFDQDRMWLNGKEISLQGGRFQSCLREIRARAQDVEDKKKGIKINKEDWQKLNLHIASYNNFPTAAGLASSAAGLACLVFSLAKLMNLKEDNSQLSAIARQGSGSACRSLYGGFVKWCMGKEENGSDSLAVQLADEKHWDDLVIIIAVVSARQKETSSTSGMRDTVVTSALIDHRAKEVVPKRIVEMEDAIQKKDFPSFA...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_012842 |
|---|---|
| TK1151 ID | TkA02G535660 |
| OH-1004 ID | LXL04_012842 |
| Relationship / confidence | Rbh High Identity Coverage Synteny / Strict |
| Protein identity (%) | 100.000 |
| Protein coverage (%) | TK1151 99.762 / OH-1004 99.526Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_012842 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr03:19628006-19630012 (+) | |||||||||
| Description | Similar to MVD2: Diphosphomevalonate decarboxylase 2 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0006695 cholesterol biosynthetic process Biological Process GO:0008284 positive regulation of cell population proliferation Biological Process GO:0008299 isoprenoid biosynthetic process Biological Process GO:0009410 response to xenobiotic stimulus Biological Process GO:0010142 farnesyl diphosphate biosynthetic process, mevalonate pathway Biological Process GO:0016104 triterpenoid biosynthetic process Biological Process GO:0016126 sterol biosynthetic process Biological Process GO:0016135 saponin biosynthetic process Biological Process GO:0019287 isopentenyl diphosphate biosynthetic process, mevalonate pathway Biological Process GO:0033386 geranylgeranyl diphosphate biosynthetic process Biological Process GO:0033489 cholesterol biosynthetic process via desmosterol Biological Process GO:0033490 cholesterol biosynthetic process via lathosterol Biological Process | |||||||||
| KEGG gene cross-reference | ath:AT2G38700 ath:AT3G54250 rno:81726 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF22700.3MVD-like_N17-190 aaPF00288.33GHMP_kinases_N107-166 aaPF18376.7MDD_C204-404 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_012842 | PF22700.3 | MVD-like_N | 17 | 190 | 5.4e-65 | 218.6 |
| LXL04_012842 | PF00288.33 | GHMP_kinases_N | 107 | 166 | 2.2e-06 | 28.5 |
| LXL04_012842 | PF18376.7 | MDD_C | 204 | 404 | 1e-65 | 221.8 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.