LXL04_010446 | RubberDandelionOmics

Gene overview

LXL04_010446

Reference: OH-1004 Chr: Chr02 Coordinates: 146679045-146680722 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1053 bp · LXL04_010446|LXL04_010446|OH1004|cDNA

ATGGAGAATTCGGAGTTGCTTCAGAAAATTGTAGTTCTTTTAGTCTGTATACATATGGAGCTTTATGGATGTCGAAAAAGATCCCGTTGTTGTACTAGTCAAATCGGCTATGCCCTAGTTCCAATGATCGCAAGAGGGGCAATGTTAGGTCCAGATCAGCCAATAATTCTACACATGCTTGATATAGAAGCCGCTTCCGACATCTTGAAAGGGGTAAAAATGGAACTAATGGATGGCGCATTCCCTCTTCTCAAAGATGT...

CDS

Download CDS FASTA

1053 bp · LXL04_010446|LXL04_010446|OH1004|CDS

ATGGAGAATTCGGAGTTGCTTCAGAAAATTGTAGTTCTTTTAGTCTGTATACATATGGAGCTTTATGGATGTCGAAAAAGATCCCGTTGTTGTACTAGTCAAATCGGCTATGCCCTAGTTCCAATGATCGCAAGAGGGGCAATGTTAGGTCCAGATCAGCCAATAATTCTACACATGCTTGATATAGAAGCCGCTTCCGACATCTTGAAAGGGGTAAAAATGGAACTAATGGATGGCGCATTCCCTCTTCTCAAAGATGT...

Protein

Download Protein FASTA

350 aa · LXL04_010446|LXL04_010446|OH1004|PROTEIN

MENSELLQKIVVLLVCIHMELYGCRKRSRCCTSQIGYALVPMIARGAMLGPDQPIILHMLDIEAASDILKGVKMELMDGAFPLLKDVITTTDVIQACKGVDIAIMLGGFPRMKGMSNKDLIKKNIGIYKAQASALEQHADPNCKVLVVSHPGNTYALILKEYAPSIPEENITSLARLDHNRALCQLSENLNVHIGDVKNVIMWGSHSSNQYPDGNHALVNIGVGHKSVKELVTDNHWLNTEFITNVQERSEAIIKARRLS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_010446`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_010446

Location Chr02:146679045-146680722 (-)

Description Similar to Malate dehydrogenase, cytoplasmic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

No hit for this species in the current source table.

Rice

Reference gene ID	Possible function	Papers / DOI
`Os10g0478200`	Malate dehydrogenase, cytoplasmic.	No verified direct reference in this release

Functional annotation source

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Functional annotation source: OH1004 · LXL04_010446 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006099 tricarboxylic acid cycle Biological Process

GO:0006107 oxaloacetate metabolic process Biological Process

GO:0006108 malate metabolic process Biological Process

GO:0019674 NAD+ metabolic process Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0030060 L-malate dehydrogenase (NAD+) activity Molecular Function

KEGG gene cross-reference

bvg:104887939

dosa:Os10g0478200

nta:107772922

zma:542598

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.645

Rank 1 · LXL04_010446 · OH-1004

Nucleus0.251

Rank 2 · LXL04_010446 · OH-1004

Mitochondrion0.121

Rank 3 · LXL04_010446 · OH-1004

Cell membrane0.084

Rank 4 · LXL04_010446 · OH-1004

Extracellular0.073

Rank 5 · LXL04_010446 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00056.30Ldh_1_N34-171 aa

PF02866.24Ldh_1_C176-342 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_010446	`PF00056.30`	Ldh_1_N	34	171	8.4e-23	81.7
LXL04_010446	`PF02866.24`	Ldh_1_C	176	342	1.4e-38	133.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q7XDC8`	Oryza sativa subsp. japonica	Malate dehydrogenase, cytoplasmic	69.401%	Swiss-Prot	strong database homology

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