Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1197 bp · LXL04_008706|LXL04_008706|OH1004|cDNA
ATGCAAAAAACAGCAGAAATGGCCTCCTTCATCCACTGGCTTCCATTCCTGCTGATTCTCGCCGCTGCCCGCAAACACGTTCCCAGAACCTTCAATGTCTTGTCTTATGGTGCACTTCCCAGTCGAAACACCAATAACAGCAAGGCATTTCTTCGAGCATGGAAGGATGCCTGTGAACGGGAGGGCGGAGGTAGGGTTTGGATCCCGAGAGGGAAGTTCAAGCTCGGTTCCGTCGTCTTCGTCGGACCTTGTAGGGGACC...
1197 bp · LXL04_008706|LXL04_008706|OH1004|CDS
ATGCAAAAAACAGCAGAAATGGCCTCCTTCATCCACTGGCTTCCATTCCTGCTGATTCTCGCCGCTGCCCGCAAACACGTTCCCAGAACCTTCAATGTCTTGTCTTATGGTGCACTTCCCAGTCGAAACACCAATAACAGCAAGGCATTTCTTCGAGCATGGAAGGATGCCTGTGAACGGGAGGGCGGAGGTAGGGTTTGGATCCCGAGAGGGAAGTTCAAGCTCGGTTCCGTCGTCTTCGTCGGACCTTGTAGGGGACC...
Protein
Download Protein FASTA398 aa · LXL04_008706|LXL04_008706|OH1004|PROTEIN
MQKTAEMASFIHWLPFLLILAAARKHVPRTFNVLSYGALPSRNTNNSKAFLRAWKDACEREGGGRVWIPRGKFKLGSVVFVGPCRGPVDFVIKGSLEASTDPSNFFVDHWIGFKYVDQLVVRGGGYLLGNGGSAWRFNDCATNSRCKPLPVTMRFDFVSNSKVHRIHSFDSKNAHFNLFACHNMNMSHIQILAPSTSPNTDGIRIGSSSNIRIQNSVISTGDDCVSMIAGSQDILVSEVHCGPGHGFSIGSLGGSHNEEY...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_008706 |
|---|---|
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_008706 |
|---|---|
| Location | Chr02:106480952-106482549 (+) |
| Description | Similar to plaa2: Exopolygalacturonase (Fragment) |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0005975 carbohydrate metabolic process Biological Process GO:0009555 pollen development Biological Process GO:0009846 pollen germination Biological Process GO:0045490 pectin catabolic process Biological Process GO:0048868 pollen tube development Biological Process GO:0071555 cell wall organization Biological Process GO:0005576 extracellular region Cellular Component GO:0005783 endoplasmic reticulum Cellular Component GO:0005794 Golgi apparatus Cellular Component GO:0031982 vesicle Cellular Component GO:0043667 pollen wall Cellular Component GO:0004650 polygalacturonase activity Molecular Function |
| KEGG gene cross-reference | bna:106427912 ghi:107942091 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF00295.24Glyco_hydro_2858-386 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_008706 | PF00295.24 | Glyco_hydro_28 | 58 | 386 | 1e-97 | 327.9 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.