LXL04_007460 | RubberDandelionOmics

Gene overview

LXL04_007460

Reference: OH-1004 Chr: Chr02 Coordinates: 49116694-49119566 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1134 bp · LXL04_007460|LXL04_007460|OH1004|cDNA

ATGAAGAAGGGAGCTAAGAGAAAGGCTGCTGCGGCGAGCCGTAAGGATGAATTAGCTTCTACTTCTACAGAACCCGCTgccgccgccaccaccaccaccgaaGCACCGGAGGAGCAACATAACAAGGAACACACAAAAGTCGGTCGACCAACAAAACGTTCGAAAGTTCCGAAGCCTGAATCTGAACCCGAGTACTTCGAGGATCAGCGTGAATTGATTGGATTTATGAAGTCAAATTTCAGACATCGAAAATCAAATTC...

CDS

Download CDS FASTA

1134 bp · LXL04_007460|LXL04_007460|OH1004|CDS

ATGAAGAAGGGAGCTAAGAGAAAGGCTGCTGCGGCGAGCCGTAAGGATGAATTAGCTTCTACTTCTACAGAACCCGCTGCCGCCGCCACCACCACCACCGAAGCACCGGAGGAGCAACATAACAAGGAACACACAAAAGTCGGTCGACCAACAAAACGTTCGAAAGTTCCGAAGCCTGAATCTGAACCCGAGTACTTCGAGGATCAGCGTGAATTGATTGGATTTATGAAGTCAAATTTCAGACATCGAAAATCAAATTC...

Protein

Download Protein FASTA

377 aa · LXL04_007460|LXL04_007460|OH1004|PROTEIN

MKKGAKRKAAAASRKDELASTSTEPAAAATTTTEAPEEQHNKEHTKVGRPTKRSKVPKPESEPEYFEDQRELIGFMKSNFRHRKSNSILEDLWKQVFPVGTEWDQLDLLSEYKWNFSNLENAFDEGGVLHGKKVYLFSCTEPQLLFFGGQSKVTCVPVVVAIVSPFPPSDKIGINSVQRESEEILDMKQMKMDWVPYIPYGKRGSSVERLKSQIYILSCVQRRAGLKHLKEDRVKKFEYCLPYFYHPLKEDETEQSTIVD...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_007460`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_007460

Location Chr02:49116694-49119566 (-)

Description Similar to HIT4: Protein HEAT INTOLERANT 4

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g10010`	Essential protein required for basal thermotolerance, especially during heat-induced chromocentre decondensation, thus regulating transcriptional gene silencing (TGS).	Arabidopsis HIT4 encodes a novel chromocentre-localized protein involved in the heat reactivation of transcriptionally silent loci and is essential for heat tolerance in plants.2013 · DOI: 10.1093/jxb/ert030 Arabidopsis HIT4, a regulator involved in heat-triggered reorganization of chromatin and release of transcriptional gene silencing, relocates from chromocenters to the nucleolus in response to heat stress.2015 · DOI: 10.1111/nph.13088

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_007460 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009408 response to heat Biological Process

GO:0010286 heat acclimation Biological Process

GO:0031452 negative regulation of heterochromatin formation Biological Process

GO:0045814 negative regulation of gene expression, epigenetic Biological Process

GO:1900034 regulation of cellular response to heat Biological Process

GO:0005730 nucleolus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0010369 chromocenter Cellular Component

KEGG gene cross-reference

ath:AT5G10010

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.781

Rank 1 · LXL04_007460 · OH-1004

Cytoplasm0.248

Rank 2 · LXL04_007460 · OH-1004

Mitochondrion0.047

Rank 3 · LXL04_007460 · OH-1004

Cell membrane0.045

Rank 4 · LXL04_007460 · OH-1004

Endoplasmic reticulum0.024

Rank 5 · LXL04_007460 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`A2RVJ8`	Arabidopsis thaliana	Protein HEAT INTOLERANT 4	57.367%	Swiss-Prot	strong database homology

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