LXL04_007299 | RubberDandelionOmics

Gene overview

LXL04_007299

Reference: OH-1004 Chr: Chr02 Coordinates: 43144618-43145954 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

873 bp · LXL04_007299|LXL04_007299|OH1004|cDNA

ATGGAATGCTTTTTCTGGACAGTTGGAGTTGTATCCGAACCTCAATATGACTCTTGCCGTGTAGAGATCACAAAAGTTGGCACGTTAATTACTGTAATTGATGACGTCTATGATGAATATGGTTCTCTTGATGAACTTATAGACTTCACAGATGCTGTGAAGAGGTGGGACATTGATGCAGTGAAACATATGCCTGAGTATTTACAACTATGCTTCCGAACTCTTTACAACACCATTAACGGAATAGGTTCTAAAAGTTC...

CDS

Download CDS FASTA

873 bp · LXL04_007299|LXL04_007299|OH1004|CDS

ATGGAATGCTTTTTCTGGACAGTTGGAGTTGTATCCGAACCTCAATATGACTCTTGCCGTGTAGAGATCACAAAAGTTGGCACGTTAATTACTGTAATTGATGACGTCTATGATGAATATGGTTCTCTTGATGAACTTATAGACTTCACAGATGCTGTGAAGAGGTGGGACATTGATGCAGTGAAACATATGCCTGAGTATTTACAACTATGCTTCCGAACTCTTTACAACACCATTAACGGAATAGGTTCTAAAAGTTC...

Protein

Download Protein FASTA

290 aa · LXL04_007299|LXL04_007299|OH1004|PROTEIN

MECFFWTVGVVSEPQYDSCRVEITKVGTLITVIDDVYDEYGSLDELIDFTDAVKRWDIDAVKHMPEYLQLCFRTLYNTINGIGSKSSIAKDQEIVQVLAKVWGELLEAFLLEAKWTHNKYIPTLQDYLENAWRSVSGVVILTHGYFLINKEIKKDVVESLEKYNELLKWSSIVFRLCNDLGTSPDEIERGKTANAISCYMHENGVCEEVAREYITNLIDEAWKELIKAQVTCSQESTNAFSDMAINLARISHCTYQHGDG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_007299`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`LXL04_007299`
Location	Chr02:43144618-43145954 (+)
Description	Similar to (E)-beta-ocimene synthase, chloroplastic
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_007299` · GCA_047496595.1_OSU_TarKok_2.0.
GO annotations (OH1004 source)	GO:0006952 defense response Biological Process GO:0009611 response to wounding Biological Process GO:0009753 response to jasmonic acid Biological Process GO:0016102 diterpenoid biosynthetic process Biological Process GO:0046246 terpene biosynthetic process Biological Process GO:0080027 response to herbivore Biological Process GO:0009507 chloroplast Cellular Component GO:0009570 chloroplast stroma Cellular Component GO:0000287 magnesium ion binding Molecular Function GO:0010333 terpene synthase activity Molecular Function GO:0034009 isoprene synthase activity Molecular Function GO:0034768 (E)-beta-ocimene synthase activity Molecular Function
KEGG gene cross-reference	ag:AAV36465 rcu:8260996 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.794

Rank 1 · LXL04_007299 · OH-1004

Nucleus0.192

Rank 2 · LXL04_007299 · OH-1004

Plastid0.122

Rank 3 · LXL04_007299 · OH-1004

Endoplasmic reticulum0.070

Rank 4 · LXL04_007299 · OH-1004

Peroxisome0.039

Rank 5 · LXL04_007299 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03936.22Terpene_synth_C1-224 aa

PF19086.6Terpene_syn_C_225-224 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_007299	`PF03936.22`	Terpene_synth_C	1	224	9.8e-81	271.3
LXL04_007299	`PF19086.6`	Terpene_syn_C_2	25	224	8.2e-58	196.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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No result was found for this query.

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