LXL04_005949 | RubberDandelionOmics

Gene overview

LXL04_005949

Reference: OH-1004 Chr: Chr01 Coordinates: 176170379-176171276 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

558 bp · LXL04_005949|LXL04_005949|OH1004|cDNA

ATGGAAACGGAATACAAAGATGTGGAGGTGGTGAATAGGAAGTCAAGCTTCAAGGGCAAGAAATTGATCTTGAGGTTCTTAGCACTCACACTCACTCTCATCGCGGCCGTTGTTCTTGGAGTCGATAAGGAGACCAAAACCGTCGGTCTCACCCTTGTTACGACGCTGCCGCCGGTCCCCGTCCCTGTCACGGCCAAGTGGAAATACCTCTCTGCATTTGTGTACTTTGTGGTTGCGAACGCAATATCATGCGTCTATGC...

CDS

Download CDS FASTA

558 bp · LXL04_005949|LXL04_005949|OH1004|CDS

ATGGAAACGGAATACAAAGATGTGGAGGTGGTGAATAGGAAGTCAAGCTTCAAGGGCAAGAAATTGATCTTGAGGTTCTTAGCACTCACACTCACTCTCATCGCGGCCGTTGTTCTTGGAGTCGATAAGGAGACCAAAACCGTCGGTCTCACCCTTGTTACGACGCTGCCGCCGGTCCCCGTCCCTGTCACGGCCAAGTGGAAATACCTCTCTGCATTTGTGTACTTTGTGGTTGCGAACGCAATATCATGCGTCTATGC...

Protein

Download Protein FASTA

185 aa · LXL04_005949|LXL04_005949|OH1004|PROTEIN

METEYKDVEVVNRKSSFKGKKLILRFLALTLTLIAAVVLGVDKETKTVGLTLVTTLPPVPVPVTAKWKYLSAFVYFVVANAISCVYAAMSLILILTSRNASKLVSMTIFILDLAMVALLFSAIGATGSVGLIGYQGNSHVQWDKVCNVFDKFCHQVAIAAFMSFAGSITFLLLIVFTALSLHKKS

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_005949`
TK1151 ID	TkA01G005150
OH-1004 ID	LXL04_005949
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_005949

Location Chr01:176170379-176171276 (+)

Description Similar to VIT_05s0020g01820: CASP-like protein 1E2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g15630`	CASP-like protein 1E1.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_005949 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0005886 plasma membrane Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0043424 protein histidine kinase binding Molecular Function

KEGG gene cross-reference

ath:AT4G15630

gmx:100500041

gmx:100793096

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.860

Rank 1 · LXL04_005949 · OH-1004

Endoplasmic reticulum0.076

Rank 2 · LXL04_005949 · OH-1004

Cytoplasm0.062

Rank 3 · LXL04_005949 · OH-1004

Lysosome / Vacuole0.036

Rank 4 · LXL04_005949 · OH-1004

Nucleus0.026

Rank 5 · LXL04_005949 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF04535.18CASP_dom17-168 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_005949	`PF04535.18`	CASP_dom	17	168	1.4e-39	136.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8L8Z1`	Arabidopsis thaliana	CASP-like protein 1E1	50.000%	Swiss-Prot	strong database homology

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