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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

LXL04_005801
Reference: OH-1004 Chr: Chr01 Coordinates: 173584259-173586701 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1676 bp · LXL04_005801|LXL04_005801|OH1004|cDNA

TTTTACAATCTACAACTTATTTCAGACACCATCCACAATTCCACATATCTCTCCCCACATGCTTTGACTCCAATCTTTGACACCGCGTAATGGGCAACTGCAACGGCGTCCCGGCTACCGCCAACGGCGgcgccaccaccaccaccaccactcaCACCTCCAACTCGAACAACCCAACTACACCACAACCACAGCAACAATCTCCACCCAAGGGCCTCACGATCCTTCCCGCATCGGATCCAGCACCTCCTCGCCAACCG...

CDS

Download CDS FASTA

1587 bp · LXL04_005801|LXL04_005801|OH1004|CDS

ATGGGCAACTGCAACGGCGTCCCGGCTACCGCCAACGGCGGCGCCACCACCACCACCACCACTCACACCTCCAACTCGAACAACCCAACTACACCACAACCACAGCAACAATCTCCACCCAAGGGCCTCACGATCCTTCCCGCATCGGATCCAGCACCTCCTCGCCAACCGCCGCCGGCGAGCGTCGGCCGTGTCCTCGGCCGCCCACTGGAAGATGTTCGCGCAACCTACACAATGGGTCGAGAGCTCGGCCGCGGCCA...

Protein

Download Protein FASTA

528 aa · LXL04_005801|LXL04_005801|OH1004|PROTEIN

MGNCNGVPATANGGATTTTTTHTSNSNNPTTPQPQQQSPPKGLTILPASDPAPPRQPPPASVGRVLGRPLEDVRATYTMGRELGRGQFGVTYLVTHKTTHQQFACKSIAMRKLVNKDDIEDVRREVQIMHHLTGHRNIVELKGAYEDRHSVNLIMELCAGGELFDRIIAKGHYSERAAAGLCRQMVTVVHNCHTMGVFHRDLKPENFLFLNTDEDSPLKATDFGLSVFFKPGDVFKDLVGSAYYVAPEVLRRRYGAEADI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDLXL04_005801
Source versionOH-1004 / GCA_047496595.1_OSU_TarKok_2.0
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDLXL04_005801
LocationChr01:173584259-173586701 (+)
DescriptionSimilar to CPK1: Calcium-dependent protein kinase 1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g23650 May play a role in signal transduction pathways that involve calcium as a second messenger.
CDPKs CPK6 and CPK3 function in ABA regulation of guard cell S-type anion- and Ca(2+)-permeable channels and stomatal closure.2006 · DOI: 10.1371/journal.pbio.0040327
At5g12180 May play a role in signal transduction pathways that involve calcium as a second messenger. No verified direct reference in this release
At5g19360 May play a role in signal transduction pathways that involve calcium as a second messenger. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os01g0622600 May play a role in signal transduction pathways that involve calcium as a second messenger. No verified direct reference in this release
Os05g0585500 May play a role in signal transduction pathways that involve calcium as a second messenger. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_005801 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)
GO:0009651 response to salt stress Biological Process
GO:0009738 abscisic acid-activated signaling pathway Biological Process
GO:0010119 regulation of stomatal movement Biological Process
GO:0035556 intracellular signal transduction Biological Process
GO:0046777 protein autophosphorylation Biological Process
GO:0080092 regulation of pollen tube growth Biological Process
GO:0000325 plant-type vacuole Cellular Component
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005829 cytosol Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0009507 chloroplast Cellular Component
KEGG gene cross-reference
ath:AT4G23650
ath:AT5G12180
ath:AT5G19360
dosa:Os05g0585500
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.540
Rank 1 · LXL04_005801 · OH-1004
Cytoplasm0.387
Rank 2 · LXL04_005801 · OH-1004
Nucleus0.223
Rank 3 · LXL04_005801 · OH-1004
Golgi apparatus0.064
Rank 4 · LXL04_005801 · OH-1004
Endoplasmic reticulum0.053
Rank 5 · LXL04_005801 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00069.32Pkinase77-335 aa
PF07714.24PK_Tyr_Ser-Thr78-330 aa
PF00036.39EF-hand_1383-409 aa
PF13499.13EF-hand_7383-443 aa
PF13405.13EF-hand_6383-411 aa
PF13202.13EF-hand_5383-405 aa
PF13833.13EF-hand_8395-442 aa
PF00036.39EF-hand_1418-445 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
LXL04_005801PF00069.32Pkinase773352.6e-76257.2
LXL04_005801PF07714.24PK_Tyr_Ser-Thr783302.9e-2796.3
LXL04_005801PF00036.39EF-hand_13834093.8e-35117.5
LXL04_005801PF13499.13EF-hand_73834431.3e-33115.8
LXL04_005801PF13405.13EF-hand_63834117.1e-2894.3
LXL04_005801PF13202.13EF-hand_53834057.2e-2482.8
LXL04_005801PF13833.13EF-hand_83954421.3e-1970.4
LXL04_005801PF00036.39EF-hand_14184453.8e-35117.5
LXL04_005801PF13499.13EF-hand_74525151.3e-33115.8
LXL04_005801PF13405.13EF-hand_64554827.1e-2894.3
LXL04_005801PF00036.39EF-hand_14574813.8e-35117.5
LXL04_005801PF13202.13EF-hand_54574777.2e-2482.8
LXL04_005801PF14658.13EF-hand_94575168.8e-1142.8
LXL04_005801PF13833.13EF-hand_84675161.3e-1970.4
LXL04_005801PF00036.39EF-hand_14905163.8e-35117.5
LXL04_005801PF13405.13EF-hand_64905167.1e-2894.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q42479Arabidopsis thalianaCalcium-dependent protein kinase 381.075%Swiss-Protstrong database homology
Q9FMP5Arabidopsis thalianaCalcium-dependent protein kinase 1769.663%Swiss-Protstrong database homology
Q3E9C0Arabidopsis thalianaCalcium-dependent protein kinase 3473.333%Swiss-Protstrong database homology
A2ZVI7Oryza sativa subsp. japonicaCalcium-dependent protein kinase 183.262%Swiss-Protstrong database homology
Q6I587Oryza sativa subsp. japonicaCalcium-dependent protein kinase 1581.974%Swiss-Protstrong database homology

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