LXL04_005746 | RubberDandelionOmics

Gene overview

LXL04_005746

Reference: OH-1004 Chr: Chr01 Coordinates: 172604879-172612242 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

3222 bp · LXL04_005746|LXL04_005746|OH1004|cDNA

ATGGAATTTGAACTGTTTAATGACTGCGCTGAGGATGATTATGGTTTTGGAGCTGAAGATATCGATAATGAACAAGAACAAGTAGTGTTTGAGGGTGATGAAGGTCAAAGATGTGGGATTTGCATGGATGTTGTTGTTGATAGAGGAGTTTTAGATTGCTGTCAGCACTGGTTCTGTTTTTCATGCATTGACAATTGGGCTACTATCACCAACCTATGTCCACTTTGTCAGGGTGAATTTCAGTTAATCACGTGTGTTCC...

CDS

Download CDS FASTA

3222 bp · LXL04_005746|LXL04_005746|OH1004|CDS

ATGGAATTTGAACTGTTTAATGACTGCGCTGAGGATGATTATGGTTTTGGAGCTGAAGATATCGATAATGAACAAGAACAAGTAGTGTTTGAGGGTGATGAAGGTCAAAGATGTGGGATTTGCATGGATGTTGTTGTTGATAGAGGAGTTTTAGATTGCTGTCAGCACTGGTTCTGTTTTTCATGCATTGACAATTGGGCTACTATCACCAACCTATGTCCACTTTGTCAGGGTGAATTTCAGTTAATCACGTGTGTTCC...

Protein

Download Protein FASTA

1073 aa · LXL04_005746|LXL04_005746|OH1004|PROTEIN

MEFELFNDCAEDDYGFGAEDIDNEQEQVVFEGDEGQRCGICMDVVVDRGVLDCCQHWFCFSCIDNWATITNLCPLCQGEFQLITCVPVYDTIGSIQPDDESYSRDDDEWSIEGNSNTVSFPSYYIDENAVSCLEGDSCKIRGQSANLEEDPDLDTSIACDSCDLWYHAICVGFDTEGSCETSWLCPKCLIDETSQKSEAGPSSKYEQLGDVNFPMNVSVSVADAGETAVVVSMVDGNQQTKVQDENMLSSVNIINDIKID...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_005746`
TK1151 ID	TkA01G019240
OH-1004 ID	LXL04_005746
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	96.700
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_005746

Location Chr01:172604879-172612242 (-)

Description Similar to At4g10930: Uncharacterized protein At4g10930

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g10930`	Uncharacterized protein At4g10930.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_005746 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0005634 nucleus Cellular Component

KEGG gene cross-reference No functional description available

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.938

Rank 1 · LXL04_005746 · OH-1004

Cytoplasm0.171

Rank 2 · LXL04_005746 · OH-1004

Cell membrane0.022

Rank 3 · LXL04_005746 · OH-1004

Mitochondrion0.021

Rank 4 · LXL04_005746 · OH-1004

Golgi apparatus0.010

Rank 5 · LXL04_005746 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13639.13zf-RING_237-77 aa

PF00097.32zf-C3HC438-76 aa

PF00628.36PHD153-188 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_005746	`PF13639.13`	zf-RING_2	37	77	4.1e-07	30.9
LXL04_005746	`PF00097.32`	zf-C3HC4	38	76	8e-06	26.3
LXL04_005746	`PF00628.36`	PHD	153	188	2.2e-06	28.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8L7I1`	Arabidopsis thaliana	Uncharacterized protein At4g10930	40.283%	Swiss-Prot	moderate database homology

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