LXL04_005561 | RubberDandelionOmics

Gene overview

LXL04_005561

Reference: OH-1004 Chr: Chr01 Coordinates: 168412212-168413880 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1155 bp · LXL04_005561|LXL04_005561|OH1004|cDNA

ATGAGAGGCGTCGATAGCACTAGGGAGACGATCAACGCCGCCGCGACGGCGATTGCATCGGCGGAGAACAGAGCACCCCAGTCTTCTTCAGTCCAGAAACGAAGATGGGGAAGTTTTTGGAGCATATCGTCGTGTTTTGGATCTCAGAAACGAAATAAGAAGATCGGCCATGCTGCTCTTATTTCCGAACCTGGTTCTTCAACAACCGAAGCTCCGACAATCGAAAACATGCCTCAACCATCTTCAATAGTCCTTCCGTT...

CDS

Download CDS FASTA

1155 bp · LXL04_005561|LXL04_005561|OH1004|CDS

ATGAGAGGCGTCGATAGCACTAGGGAGACGATCAACGCCGCCGCGACGGCGATTGCATCGGCGGAGAACAGAGCACCCCAGTCTTCTTCAGTCCAGAAACGAAGATGGGGAAGTTTTTGGAGCATATCGTCGTGTTTTGGATCTCAGAAACGAAATAAGAAGATCGGCCATGCTGCTCTTATTTCCGAACCTGGTTCTTCAACAACCGAAGCTCCGACAATCGAAAACATGCCTCAACCATCTTCAATAGTCCTTCCGTT...

Protein

Download Protein FASTA

384 aa · LXL04_005561|LXL04_005561|OH1004|PROTEIN

MRGVDSTRETINAAATAIASAENRAPQSSSVQKRRWGSFWSISSCFGSQKRNKKIGHAALISEPGSSTTEAPTIENMPQPSSIVLPFMAPPSSPASFLQSEPPSATQSPGGLLSFTAASSGMYSPTDPTNMFAVGPYAHERQLVSPPVFSTYTTEPSTAPFTPPPESVHLTTPSSPEVPFARFLGSGNQTGEVDRKFTSSHNEFQLSQLYPGSPIGQLISPSSGVSNSGTSSPFPNTRPFILQNPTGAKLWPRGWESQQQ...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_005561`
TK1151 ID	TkA01G034230
OH-1004 ID	LXL04_005561
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_005561

Location Chr01:168412212-168413880 (+)

Description Similar to At1g76660: Uncharacterized protein At1g76660

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g76660`	Uncharacterized protein At1g76660.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_005561 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0005634 nucleus Cellular Component

GO:0005886 plasma membrane Cellular Component

KEGG gene cross-reference

ath:AT1G76660

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.600

Rank 1 · LXL04_005561 · OH-1004

Nucleus0.316

Rank 2 · LXL04_005561 · OH-1004

Cell membrane0.142

Rank 3 · LXL04_005561 · OH-1004

Mitochondrion0.052

Rank 4 · LXL04_005561 · OH-1004

Lysosome / Vacuole0.046

Rank 5 · LXL04_005561 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF30477.1At1g7666021-238 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_005561	`PF30477.1`	At1g76660	21	238	6.2e-52	178.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SRE5`	Arabidopsis thaliana	Uncharacterized protein At1g76660	49.763%	Swiss-Prot	moderate database homology

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